Obligatory MANIFEST.in repair

ReadTheDocs needs this.

.dockerignore

@@ -0,0 +1,31 @@
+*.ipynb
+*.pdf
+*.pyc
+*.rst
+*.sublime*
+*/*.pyc
+*/*/*.pyc
+*/*/*/*.pyc
+*/*/*/*/*.pyc
+*/*/*/*/*/*.pyc
+*/*/*/*/*/*/*.pyc
+*/*/*/*/*/*/*/*.pyc
+.cache/
+.git/
+.ipynb_checkpoints/
+.ruffus_history.sqlite
+bin/
+build/
+dist/
+htmlcov/
+include/
+lib/
+MANIFEST.in
+ocrmypdf.egg-info/
+staging/
+tests/cache/
+tests/output/
+tests/resources/private/
+tmp/
+venv-3.4/
+venv-3.5/

.git_archival.txt

@@ -0,0 +1 @@
+ref-names: $Format:%D$

.gitattributes

@@ -1,22 +1,10 @@
 # Always use Unix convention for new lines
 * text eol=lf
 
-# Custom for Visual Studio
-*.cs     diff=csharp
-*.sln    merge=union
-*.csproj merge=union
-*.vbproj merge=union
-*.fsproj merge=union
-*.dbproj merge=union
+# These files are binary and should be left untouched
+# (binary is a macro for -text -diff)
+*.jar	binary
+*.pdf	binary
+*.PDF	binary
 
-# Standard to msysgit
-*.doc	 diff=astextplain
-*.DOC	 diff=astextplain
-*.docx diff=astextplain
-*.DOCX diff=astextplain
-*.dot  diff=astextplain
-*.DOT  diff=astextplain
-*.pdf  diff=astextplain
-*.PDF	 diff=astextplain
-*.rtf	 diff=astextplain
-*.RTF	 diff=astextplain
+.git_archival.txt  export-subst

.github/ISSUE_TEMPLATE

@@ -0,0 +1,3 @@
+Please include the command line and (if needed) a test file with your issue report.
+
+If possible, please use a test file that we can include in future test cases (no personal information, no copyrighted material).

.gitignore

@@ -1,167 +1,34 @@
-releasePackage.sh
-tmp/
-log/
+# Development environment
+*.pyc
+*.sublime-*
+venv-*/
+pyvenv.cfg
+tasks.py
 
-#################
-## Eclipse
-#################
+# Package building
+*.egg-info/
+.cache/
+.eggs/
+build/
+dist/
+wheelhouse/
 
-*.pydevproject
-.project
-.metadata
-bin/
-tmp/
-*.tmp
-*.bak
-*.swp
-*~.nib
-local.properties
-.classpath
-.settings/
-.loadpath
+# Automatically generated files
+ocrmypdf/lib/_*.py
+ocrmypdf/version.py
+docs/_build/
+docs/_static/
+docs/_templates/
 
-# External tool builders
-.externalToolBuilders/
-
-# Locally stored "Eclipse launch configurations"
-*.launch
-
-# CDT-specific
-.cproject
-
-# PDT-specific
-.buildpath
-
-
-#################
-## Visual Studio
-#################
-
-## Ignore Visual Studio temporary files, build results, and
-## files generated by popular Visual Studio add-ons.
-
-# User-specific files
-*.suo
-*.user
-*.sln.docstates
-
-# Build results
-[Dd]ebug/
-[Rr]elease/
-*_i.c
-*_p.c
-*.ilk
-*.meta
-*.obj
-*.pch
-*.pdb
-*.pgc
-*.pgd
-*.rsp
-*.sbr
-*.tlb
-*.tli
-*.tlh
-*.tmp
-*.vspscc
-.builds
-*.dotCover
-
-## TODO: If you have NuGet Package Restore enabled, uncomment this
-#packages/
-
-# Visual C++ cache files
-ipch/
-*.aps
-*.ncb
-*.opensdf
-*.sdf
-
-# Visual Studio profiler
-*.psess
-*.vsp
-
-# ReSharper is a .NET coding add-in
-_ReSharper*
-
-# Installshield output folder
-[Ee]xpress
-
-# DocProject is a documentation generator add-in
-DocProject/buildhelp/
-DocProject/Help/*.HxT
-DocProject/Help/*.HxC
-DocProject/Help/*.hhc
-DocProject/Help/*.hhk
-DocProject/Help/*.hhp
-DocProject/Help/Html2
-DocProject/Help/html
-
-# Click-Once directory
-publish
-
-# Others
-[Bb]in
-[Oo]bj
-sql
-TestResults
-*.Cache
-ClientBin
-stylecop.*
-~$*
-*.dbmdl
-Generated_Code #added for RIA/Silverlight projects
-
-# Backup & report files from converting an old project file to a newer
-# Visual Studio version. Backup files are not needed, because we have git ;-)
-_UpgradeReport_Files/
-Backup*/
-UpgradeLog*.XML
-
-
-
-############
-## Windows
-############
-
-# Windows image file caches
-Thumbs.db
-
-# Folder config file
-Desktop.ini
-
-
-#############
-## Python
-#############
-
-*.py[co]
-
-# Packages
-*.egg
-*.egg-info
-dist
-build
-eggs
-parts
-bin
-var
-sdist
-develop-eggs
-.installed.cfg
-
-# Installer logs
-pip-log.txt
-
-# Unit test / coverage reports
+# Code coverage
 .coverage
-.tox
+htmlcov/
 
-#Translations
-*.mo
-
-#Mr Developer
-.mr.developer.cfg
-
-# Mac crap
-.DS_Store
+# Testing
+log/
+/*.pdf
+.ipynb_checkpoints/
+tests/cache/
+tests/output/
+tests/resources/private/
+tmp/

.travis.yml

@@ -0,0 +1,45 @@
+sudo: required
+dist: trusty
+language: python
+
+cache: pip
+
+cache:
+    directories:
+        - $HOME/.ccache
+        - packages
+        - tests/cache
+
+python:
+    - 3.4
+    - 3.5
+
+before_cache:
+    - rm -f $HOME/.cache/pip/log/debug.log
+
+before_install:
+    # Ubuntu packages
+    - sudo add-apt-repository ppa:vshn/ghostscript -y  # for ghostscript 9.16 (trusty has 9.10)
+    - sudo add-apt-repository ppa:heyarje/libav-11 -y  # for libav11, which is for unpaper
+    - sudo apt-get update -qq  # must go after all add-apt-repo
+    - sudo apt-get install -y ghostscript tesseract-ocr tesseract-ocr-deu tesseract-ocr-eng tesseract-ocr-fra qpdf poppler-utils libavformat56 libavcodec56 libavutil54 libffi-dev
+
+    # pip
+    - pip install --upgrade pip
+
+    # Download, make and install unpaper (using ccache)
+    - mkdir -p packages
+    - "[ -f packages/unpaper_6.1-1.deb ] || wget -q https://dl.dropboxusercontent.com/u/28971240/unpaper_6.1-1.deb -O packages/unpaper_6.1-1.deb"
+    - sudo dpkg -i packages/unpaper_6.1-1.deb
+
+install:
+    - pip install -r requirements.txt
+    - pip install -r test_requirements.txt
+
+script:
+    - python setup.py clean
+    - python setup.py install
+    - python setup.py test
+
+os:
+    - linux

COPYRIGHT.md

@@ -1,17 +0,0 @@
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in
-all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-THE SOFTWARE.

Dockerfile

@@ -0,0 +1,91 @@
+# OCRmyPDF
+#
+# VERSION               3.2
+FROM      debian:stretch
+MAINTAINER James R. Barlow <jim@purplerock.ca>
+
+# Add unprivileged user
+RUN useradd docker \
+  && mkdir /home/docker \
+  && chown docker:docker /home/docker
+
+# Update system and install our dependencies
+# If this command takes too Docker hub's automated build will timeout,
+# so try it in portions
+RUN apt-get update && apt-get install -y --no-install-recommends \
+  locales \
+  python3 \
+  python3-pip \
+  python3-venv \
+  python3-reportlab \
+  python3-pil \
+  python3-wheel
+
+RUN apt-get install -y --no-install-recommends \
+  unpaper \
+  qpdf \
+  poppler-utils \
+  tesseract-ocr \
+  tesseract-ocr-deu tesseract-ocr-spa tesseract-ocr-eng tesseract-ocr-fra
+
+RUN apt-get install -qy --no-install-recommends \
+  libffi-dev \
+  libpython3-dev \
+  gcc
+
+# Install Ghostscript from Debian sid to work around JPEG 2000 issue in
+# Debian stretch libgs9 or gs 9.16~dfsg-2.1
+
+COPY ./share/etc-apt-sources.list /etc/apt/sources.list
+
+RUN apt-get update && apt-get install -y ghostscript/sid
+
+
+# Enforce UTF-8
+# Borrowed from https://index.docker.io/u/crosbymichael/python/ 
+RUN dpkg-reconfigure locales && \
+  locale-gen C.UTF-8 && \
+  /usr/sbin/update-locale LANG=C.UTF-8
+ENV LC_ALL C.UTF-8
+
+
+# Set up a Python virtualenv and take all of the system packages, so we can
+# rely on the platform packages rather than importing GCC and compiling them
+RUN pyvenv /appenv \
+  && pyvenv --system-site-packages /appenv
+
+COPY . /application/
+
+# Replace stock Tesseract 3.04.00 font with improved sharp2.ttf that resolves
+# issues in many PDF viewers.
+# Discussion is in https://github.com/tesseract-ocr/tesseract/issues/182
+COPY ./share/sharp2.ttf /usr/share/tesseract-ocr/tessdata/pdf.ttf
+RUN chmod 644 /usr/share/tesseract-ocr/tessdata/pdf.ttf
+
+# Set this here to force a docker version, allowing non-tagged versions to
+# be built
+# ENV SETUPTOOLS_SCM_PRETEND_VERSION=v3.3.0
+
+# Install application and dependencies
+# In this arrangement Pillow and reportlab will be provided by the system
+# Even though ocrmypdf is locally present, pull from PyPI because
+# Dockerhub and setuptools_scm clash
+RUN . /appenv/bin/activate; \
+  pip install --upgrade pip \
+  && pip install ocrmypdf \
+  && pip install --no-cache-dir -r /application/test_requirements.txt
+
+# Remove the junk
+RUN apt-get remove -qy gcc
+RUN apt-get autoremove -y && apt-get clean -y
+RUN rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /root/*
+
+USER docker
+WORKDIR /home/docker
+
+ENV OCRMYPDF_TEST_OUTPUT=/tmp/test-output
+ENV OCRMYPDF_SHARP_TTF=1
+
+# Must use array form of ENTRYPOINT
+# Non-array form does not append other arguments, because that is "intuitive"
+ENTRYPOINT ["/application/docker-wrapper.sh"]

Dockerfile.polyglot

@@ -0,0 +1,16 @@
+# OCRmyPDF polyglot
+#
+# VERSION               3.2
+FROM      jbarlow83/ocrmypdf:latest
+MAINTAINER James R. Barlow <jim@purplerock.ca>
+
+# Update system and install our dependencies
+USER root
+RUN apt-get update && apt-get install -y --no-install-recommends \
+  tesseract-ocr-all 
+
+USER docker
+
+# Must use array form of ENTRYPOINT
+# Non-array form does not append other arguments, because that is "intuitive"
+ENTRYPOINT ["/application/docker-wrapper.sh"]

LICENSE.rst

@@ -0,0 +1,20 @@
+Copyright (c) 2013-2016, The OCRmyPDF Authors
+
+Permission is hereby granted, free of charge, to any person obtaining a
+copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be included
+in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

MANIFEST.in

@@ -0,0 +1,48 @@
+# requirements
+include requirements.txt
+include test_requirements.txt
+include dev_requirements.txt
+
+# git
+include .git_archival.txt
+
+# docker
+include Dockerfile
+include Dockerfile.polyglot
+include .dockerignore
+
+# tests
+include pytest.ini
+recursive-include tests *.jpg
+recursive-include tests *.pdf
+recursive-include tests *.py
+recursive-include tests *.rst
+recursive-include tests *.txt
+recursive-exclude tests/output *
+recursive-exclude tests/output_pageinfo *
+recursive-exclude tests/resources/private *
+recursive-exclude tests/cache *
+
+# documentation
+include *.rst
+include pipeline.svg
+recursive-exclude .github * 
+recursive-include docs *.py
+recursive-include docs *.rst
+recursive-include docs *.svg
+recursive-exclude docs/_build *
+
+
+# support files
+recursive-include ocrmypdf/data *
+recursive-include share *
+include *.py
+exclude tasks.py
+
+# code
+recursive-include ocrmypdf *.py
+exclude ocrmypdf/lib/_leptonica.py
+include OCRmyPDF.sh
+include docker-wrapper.sh
+
+

OCRmyPDF.sh

@@ -1,336 +1,8 @@
 #!/bin/sh
 ##############################################################################
-# Copyright (c) 2013: fritz-hh from Github (https://github.com/fritz-hh)
+# Copyright (c) 2013-14: fritz-hh from Github (https://github.com/fritz-hh)
 ##############################################################################
 
-VERSION="alpha0"
+echo "This script is deprecated. Use 'ocrmypdf' instead."
 
-usage() {
-	cat << EOF
---------------------------------------------------------------------------------------
-Script aimed at generating a searchable PDF file from a PDF file containing only images.
-(The script performs optical character recognition of each respective page using the
-tesseract engine)
-
-Copyright: fritz from NAS4Free forum
-Version: $VERSION
-
-Usage: OCRmyPDF.sh  [-h] [-v] [-g] [-k] [-d] [-c] [-i] [-l language] [-C filename] inputfile outputfile
-
--h : Display this help message
--v : Increase the verbosity (this option can be used more than once)
--g : Activate debug mode:
-     - Generates a PDF file containing each page twice (once with the image, once without the image
-       but with the OCRed text as well as the detected bounding boxes)
-     - Set the verbosity to the highest possible 
--k : Do not delete the temporary files
--d : Deskew each page before performing OCR
--c : Clean each page before performing OCR
--i : Incorporate the cleaned image in the final PDF file (by default the original image	
-     image, or the deskewed image if the -d option is set, is incorporated)
--l : Set the language of the PDF file in order to improve OCR results (default "eng")
-     Any language supported by tesseract is supported.
--C : Pass an additional configuration file to the tesseract OCR engine.
-     (this option can be used more than once)
-     Note: The configuration file must be available in the "tessdata/configs" folder
-     of your tesseract installation
-inputfile  : PDF file to be OCRed
-outputfile : The PDF/A file to be generated 
---------------------------------------------------------------------------------------
-EOF
-}
-
-
-#################################################
-# Get an absolute path from a relative path to a file
-#
-# Param1 : Relative path
-# Returns: 1 if the folder in which the file is located does not exist
-#          0 otherwise
-################################################# 
-absolutePath() {
-	local wdsave absolutepath 
-	wdsave="`pwd`"
-	! cd "`dirname "$1"`" 1> /dev/null 2> /dev/null && return 1
-	absolutepath="`pwd`/`basename $1`"
-	cd "$wdsave"
-	echo "$absolutepath"
-	return 0
-}
-
-
-
-# Initialization of constants
-EXIT_BAD_ARGS="1"		# possible exit codes
-EXIT_BAD_INPUT_FILE="2"
-EXIT_MISSING_DEPENDENCY="3"
-EXIT_INVALID_OUPUT_PDFA="4"
-EXIT_OTHER_ERROR="5"
-LOG_ERR="0"			# 0=only error messages
-LOG_INFO="1"			# 1=error messages and some infos
-LOG_DEBUG="2"			# 2=debug level logging
-SRC="./src"				# location of the source folder (except source of external tools like jhove)
-JHOVE="./jhove/bin/JhoveApp.jar"	# java SW for validating the final PDF/A
-JHOVE_CFG="./jhove/conf/jhove.conf"	# location of the jhove config file
-
-# Initialization the configuration parameters with default values
-VERBOSITY="$LOG_ERR"		# default verbosity level
-LAN="eng"			# default language of the PDF file (required to get good OCR results)
-KEEP_TMP="0"			# do not delete the temporary files (default)
-PREPROCESS_DESKEW="0"		# 0=no, 1=yes (deskew image)
-PREPROCESS_CLEAN="0"		# 0=no, 1=yes (clean image to improve OCR)
-PREPROCESS_CLEANTOPDF="0"	# 0=no, 1=yes (put cleaned image in final PDF)
-DEBUG_MODE="0"			# 0=no, 1=yes (generates each PDF page twice, with and without image)
-TESS_CFG_FILES=""		# list of additional configuration files to be used by tesseract
-
-# Parse optional command line arguments
-while getopts ":hvgkdcil:C:" opt; do
-	case $opt in
-		h) usage ; exit 0 ;;
-		v) VERBOSITY=$(($VERBOSITY+1)) ;;
-		g) VERBOSITY="10"; DEBUG_MODE="1" ;;
-		k) KEEP_TMP="1" ;;
-		d) PREPROCESS_DESKEW="1" ;;
-		c) PREPROCESS_CLEAN="1" ;;
-		i) PREPROCESS_CLEANTOPDF="1" ;;
-		l) LAN="$OPTARG" ;;
-		C) TESS_CFG_FILES="$OPTARG $TESS_CFG_FILES" ;;
-		\?)
-			echo "Invalid option: -$OPTARG" >&2
-			usage
-			exit $EXIT_BAD_ARGS ;;
-		:)
-			echo "Option -$OPTARG requires an argument" >&2
-			usage
-			exit $EXIT_BAD_ARGS ;;
-	esac
-done
-
-# Remove the optional arguments parsed above.
-shift $((OPTIND-1))
-
-# Check if the number of mandatory parameters
-# provided is as expected
-if [ "$#" -ne "2" ]; then
-	echo "Exactly one mandatory argument shall be provided" >&2
-	usage
-	exit $EXIT_BAD_ARGS
-fi
-
-! absolutePath "$1" > /dev/null && echo "The folder in which the input file should be located does not exist. Exiting..." >&2 && exit $EXIT_BAD_ARGS
-FILE_INPUT_PDF="`absolutePath "$1"`"
-! absolutePath "$2" > /dev/null  && echo "The folder in which the output file should be generated does not exist. Exiting..." >&2 && exit $EXIT_BAD_ARGS
-FILE_OUTPUT_PDFA="`absolutePath "$2"`"
-
-
-
-# set script path as working directory
-cd "`dirname $0`"
-
-[ $VERBOSITY -ge $LOG_INFO ] && echo "OCRmyPDF version: $VERSION"
-
-# check if the required utilities are installed
-[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Checking if all dependencies are installed"
-! command -v identify > /dev/null && echo "Please install ImageMagick. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-! command -v pdfimages > /dev/null && echo "Please install poppler-utils. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-! command -v pdftoppm > /dev/null && echo "Please install poppler-utils. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-! command -v pdftk > /dev/null && echo "Please install pdftk. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-[ $PREPROCESS_CLEAN -eq 1 ] && ! command -v unpaper > /dev/null && echo "Please install unpaper. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-! command -v tesseract > /dev/null && echo "Please install tesseract and tesseract-data. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-! command -v python > /dev/null && echo "Please install python, and the python libraries: reportlab, lxml. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-! command -v gs > /dev/null && echo "Please install ghostcript. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-! command -v java > /dev/null && echo "Please install java. Exiting..." >&2 && exit $EXIT_MISSING_DEPENDENCY
-
-
-
-
-# Initialize path to temporary files
-TMP_FLD="./tmp/`date +"%Y%m%d_%H%M"`.filename.`basename "$FILE_INPUT_PDF" | sed s/[.][^.]*//`"
-FILE_SIZE_PAGES="$TMP_FLD/page-sizes.txt"		# size in pt of the respective page of the input PDF file
-FILES_OCRed_PDFS="${TMP_FLD}/*-ocred.pdf"		# string matching all 1 page PDF files that need to be merged
-FILE_OUTPUT_PDF="${TMP_FLD}/ocred.pdf"			# name of the OCRed PDF file before conversion to PDF/A
-FILE_VALIDATION_LOG="${TMP_FLD}/pdf_validation.log"	# log file containing the results of the validation of the PDF/A file
-
-# Create tmp folder
-[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Creating temporary folder"
-rm -r -f "${TMP_FLD}"
-mkdir -p "${TMP_FLD}"
-
-
-
-
-# get the size of each pdf page (width / height) in pt (inch*72)
-[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Input file: Extracting size of each page (in pt)"
-! identify -format "%w %h\n" "$FILE_INPUT_PDF" > "$FILE_SIZE_PAGES" \
-	&& echo "Could not get size of PDF pages. Exiting..." >&2 && exit $EXIT_BAD_INPUT_FILE
-sed -I "" '/^$/d' "$FILE_SIZE_PAGES"	# removing empty lines (last one should be)
-numpages=`cat "$FILE_SIZE_PAGES" | wc -l | sed 's/^ *//g'`
-[ $VERBOSITY -ge $LOG_INFO ] && echo "Input file: The file has $numpages pages"
-
-# Itterate the pages of the input pdf file
-cpt="1"
-while read pageSize ; do
-
-	# add leading zeros to the page number
-	page=`printf "%04d" $cpt`
-	[ $VERBOSITY -ge $LOG_INFO ] && echo "Processing page $page"
-	
-	# create the name of the required file
-	curOrigImg="$TMP_FLD/${page}_Image"			# original image available in the current PDF page 
-							# (the image file may have a different orientation than in the pdf file)
-	curHocr="$TMP_FLD/$page.hocr"			# hocr file to be generated by the OCR SW for the current page
-	curOCRedPDF="$TMP_FLD/${page}-ocred.pdf"		# PDF file containing the image + the OCRed text for the current page
-	curOCRedPDFDebug="$TMP_FLD/${page}-debug-ocred.pdf"	# PDF file containing data required to find out if OCR worked correctly
-	
-	# get width / height of PDF page (in pt)
-	widthPDF=`echo $pageSize | cut -f1 -d" "`
-	heightPDF=`echo $pageSize | cut -f2 -d" "`
-	[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: size ${heightPDF}x${widthPDF} (h*w in pt)"
-	# extract raw image from pdf file to compute resolution
-	# unfortunatelly this image can have another orientation than in the pdf...
-	# so we will have to extract it again later
-	pdfimages -f $page -l $page -j "$FILE_INPUT_PDF" "$curOrigImg" 1>&2	
-	# count number of extracted images
-	nbImg=`ls -1 "$curOrigImg"* | wc -l`
-	[ $nbImg -ne "1" ] && echo "Expecting exactly 1 image on page $page (found $nbImg). Exiting..." >&2 && exit $EXIT_BAD_INPUT_FILE
-	# Get characteristics of the extracted image
-	curImg=`ls -1 "$curOrigImg"*`
-	propCurImg=`identify -format "%w %h %[colorspace]" "$curImg"`
-	widthCurImg=`echo "$propCurImg" | cut -f1 -d" "`
-	heightCurImg=`echo "$propCurImg" | cut -f2 -d" "`
-	colorspaceCurImg=`echo "$propCurImg" | cut -f3 -d" "`
-	# switch height/width values if the image has not the right orientation
-	# we make here the assumption that vertical/horizontal dpi are equal
-	# we will check that later
-	if [ $((($heightPDF-$widthPDF)*($heightCurImg-$widthCurImg))) -lt 0 ]; then
-		[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: Extracted image has wrong orientation. Inverting image height/width values"
-		tmpval=$heightCurImg
-		heightCurImg=$widthCurImg
-		widthCurImg=$tmpval
-	fi
-	[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: size ${heightCurImg}x${widthCurImg} (h*w pixel)"	
-	# compute the resolution of the image
-	dpi_x=$(($widthCurImg*72/$widthPDF))
-	dpi_y=$(($heightCurImg*72/$heightPDF))
-	[ "$dpi_x" -ne "$dpi_y" ] && echo "X/Y resolutions not equal ($dpi_x/$dpi_y). Exiting..." >&2 && exit $EXIT_BAD_INPUT_FILE
-	dpi="$dpi_x"
-	
-	# Identify if page image should be saved as ppm (color) or pgm (gray)
-	ext="ppm"
-	opt=""		
-	if [ $colorspaceCurImg == "Gray" ]; then
-		ext="pgm"
-		opt="-gray"
-	fi
-	curImgPixmap="$TMP_FLD/$page.$ext"
-	curImgPixmapDeskewed="$TMP_FLD/$page.deskewed.$ext"
-	curImgPixmapClean="$TMP_FLD/$page.cleaned.$ext"
-	
-	# extract current page as image with right orientation and resoltution
-	[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: Extracting image as $ext file (${dpi} dpi)"
-	! pdftoppm -f $page -l $page -r $dpi $opt "$FILE_INPUT_PDF" > "$curImgPixmap" \
-		&& echo "Could not extract page $page as $ext from $FILE_INPUT_PDF. Exiting..." >&2 && exit $EXIT_OTHER_ERROR
-
-	# if requested deskew image (without changing its size in pixel)
-	if [ "$PREPROCESS_DESKEW" -eq "1" ]; then
-		[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: Deskewing image"
-		! convert "$curImgPixmap" -deskew 40% -gravity center -extent ${heightCurImg}x${widthCurImg} "$curImgPixmapDeskewed" \
-			&& echo "Could not deskew \"$curImgPixmap\". Exiting..." >&2 && exit $EXIT_OTHER_ERROR
-	else
-		cp "$curImgPixmap" "$curImgPixmapDeskewed"
-	fi
-
-	# if requested clean image with unpaper to get better OCR results
-	if [ "$PREPROCESS_CLEAN" -eq "1" ]; then
-		[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: Cleaning image with unpaper"
-		! unpaper --dpi $dpi --mask-scan-size 100 \
-			--no-deskew --no-grayfilter --no-blackfilter --no-mask-center --no-border-align \
-			"$curImgPixmapDeskewed" "$curImgPixmapClean" 1> /dev/null \
-			&& echo "Could not clean \"$curImgPixmapDeskewed\". Exiting..." >&2 && exit $EXIT_OTHER_ERROR
-	else
-		cp "$curImgPixmapDeskewed" "$curImgPixmapClean"
-	fi
-
-	# perform OCR
-	[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: Performing OCR"
-	! tesseract -l "$LAN" "$curImgPixmapClean" "$curHocr" hocr $TESS_CFG_FILES 1> /dev/null 2> /dev/null \
-		&& echo "Could not OCR file \"$curImgPixmapClean\". Exiting..." >&2 && exit $EXIT_OTHER_ERROR
-	mv "$curHocr.html" "$curHocr"
-
-	# embed text and image to new pdf file
-	if [ "$PREPROCESS_CLEANTOPDF" -eq "1" ]; then
-		image4finalPDF="$curImgPixmapClean"
-	else
-		image4finalPDF="$curImgPixmapDeskewed"	
-	fi
-	[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: Embedding text in PDF"
-	! python $SRC/hocrTransform.py -r $dpi -i "$image4finalPDF" "$curHocr" "$curOCRedPDF" \
-		&& echo "Could not create PDF file from \"$curHocr\". Exiting..." >&2 && exit $EXIT_OTHER_ERROR
-	
-	# if requested generate special debug PDF page with visible OCR text
-	if [ $DEBUG_MODE -eq "1" ] ; then
-		[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Page $page: Embedding text in PDF (debug page)"
-		! python $SRC/hocrTransform.py -b -r $dpi "$curHocr" "$curOCRedPDFDebug" \
-			&& echo "Could not create PDF file from \"$curHocr\". Exiting..." >&2 && exit $EXIT_OTHER_ERROR	
-	fi
-	
-	# delete temporary files created for the current page
-	# to avoid using to much disk space in case of PDF files having many pages
-	if [ $KEEP_TMP -eq 0 ]; then
-		rm "$curOrigImg"*.*
-		rm "$curHocr"
-		rm "$curImgPixmap"
-		rm "$curImgPixmapDeskewed"
-		rm "$curImgPixmapClean"
-	fi
-
-	# go to next page of the pdf
-	cpt=$(($cpt+1))
-	
-done < "$FILE_SIZE_PAGES"
-
-
-
-
-# concatenate all pages
-[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Output file: Concatenating all pages"
-! pdftk $FILES_OCRed_PDFS cat output "$FILE_OUTPUT_PDF" \
-	&& echo "Could not concatenate individual PDF pages (\"$FILES_OCRed_PDFS\") to one file. Exiting..." >&2 && exit $EXIT_OTHER_ERROR
-
-# insert metadata (copy metadata from input file)
-#echo "Output file: Inserting metadata"
-# TODO (may work with pdftk update_info)
-# the name of the file may be used as title
-
-# convert the pdf file to match PDF/A format
-[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Output file: Converting to PDF/A" 
-! gs -dQUIET -dPDFA -dBATCH -dNOPAUSE -dUseCIEColor \
-	-sProcessColorModel=DeviceCMYK -sDEVICE=pdfwrite -sPDFACompatibilityPolicy=2 \
-	-sOutputFile=$FILE_OUTPUT_PDFA "$FILE_OUTPUT_PDF" 1> /dev/null 2> /dev/null \
-	&& echo "Could not convert PDF file \"$FILE_OUTPUT_PDF\" to PDF/A. Exiting..." >&2 && exit $EXIT_OTHER_ERROR
-
-# validate generated pdf file (compliance to PDF/A)
-[ $VERBOSITY -ge $LOG_DEBUG ] && echo "Output file: Checking compliance to PDF/A standard" 
-java -jar "$JHOVE" -c "$JHOVE_CFG" -m PDF-hul "$FILE_OUTPUT_PDFA" > "$FILE_VALIDATION_LOG"
-grep -i "Status|Message" "$FILE_VALIDATION_LOG" # summary of the validation
-[ $VERBOSITY -ge $LOG_DEBUG ] && cat "$FILE_VALIDATION_LOG"
-# check the validation results
-pdf_valid=1
-grep -i 'ErrorMessage' "$FILE_VALIDATION_LOG" && pdf_valid=0
-grep -i 'Status.*not valid' "$FILE_VALIDATION_LOG" && pdf_valid=0
-grep -i 'Status.*Not well-formed' "$FILE_VALIDATION_LOG" && pdf_valid=0
-! grep -i 'Profile:.*PDF/A-1' "$FILE_VALIDATION_LOG" && pdf_valid=0
-
-
-
-# delete temporary files
-if [ $KEEP_TMP -eq 0 ]; then
-	rm -r -f "${TMP_FLD}"
-fi
-
-
-
-[ $pdf_valid -ne 1 ] && echo "Output file: The generated PDF/A file is INVALID" >&2 && exit $EXIT_INVALID_OUPUT_PDFA
-
-[ $VERBOSITY -ge $LOG_INFO ] && echo "Output file: The generated PDF/A file is VALID"
-exit 0
+python3 -m ocrmypdf.main "$@"

README.md

@@ -1,40 +0,0 @@
-OCRmyPDF
-========
-
-OCRmyPDF adds an OCR text layer to scanned PDF files, allowing them to be searched
-
-To get the script usage, call: ./OCmyPDF.sh -h
-
-Features
---------
-
-- Generate a searchable PDF/A file from a PDF file containing only images
-- Keep the exact resolution of the original embedded images
-- If requested deskew and / or clean the image before performing OCR
-- Validate the generated file against the PDF/A specification using jhove
-- Provides debug mode to enable easy verification of the OCR results
-
-Motivation
-----------
-
-I searched the web for a free command line tool to OCR PDF files on linux/unix:
-I found many, but none of them were really satisfying.
-- Either they produced PDF files with misplaced text under the image (making copy/paste impossible)
-- Or they changed the resolution of the embedded images
-- Or they generated PDF file having a ridiculous big size
-- Or they crashed when trying to OCR some of my PDF files
-- Or they did not produce valid PDF files (even though they were readable with my current PDF reader) 
-- On top of that none of them produced PDF/A files (format dedicated for long time storage / archiving)
-
-... so I decided to develop my own tool (using various existing scripts as an inspiration)
-
-Install
---------
-
-Download OCRmyPDF here: https://github.com/fritz-hh/OCRmyPDF/tags
-
-Copy the file in onto your linux/unix machine and extract it.
-
-Run: "sh ./OCRmyPDF.sh" to get the script usage
-
-If not yet installed, the script will notify you about dependencies that need to be installed

README.rst

@@ -0,0 +1,119 @@
+OCRmyPDF
+========
+
+OCRmyPDF adds an OCR text layer to scanned PDF files, allowing them to
+be searched or copy-pasted.
+
+.. code-block:: bash
+
+   ocrmypdf                      # it's a scriptable command line program
+      -l eng+fra                 # it supports multiple languages
+      --rotate-pages             # it can fix pages that are misrotated
+      --deskew                   # it can deskew crooked PDFs!
+      --title "My PDF"           # it can change output metadata
+      --jobs 4                   # it uses multiple cores by default
+      --output-type pdfa         # it produces PDF/A by default
+      input_scanned.pdf          # takes PDF input (or images)
+      output_searchable.pdf      # produces validated PDF output
+
+
+Main features
+-------------
+
+-  Generates a searchable
+   `PDF/A <https://en.wikipedia.org/?title=PDF/A>`_ file from a regular PDF
+-  Places OCR text accurately below the image to ease copy / paste
+-  Keeps the exact resolution of the original embedded images
+-  When possible, inserts OCR information as a "lossless" operation without rendering vector information
+-  Keeps file size about the same
+-  If requested deskews and/or cleans the image before performing OCR
+-  Validates input and output files
+-  Provides debug mode to enable easy verification of the OCR results
+-  Processes pages in parallel when more than one CPU core is
+   available
+-  Uses `Tesseract OCR <https://github.com/tesseract-ocr/tesseract>`_ engine
+-  Supports more than `100 languages <https://github.com/tesseract-ocr/tessdata>`_ recognized by Tesseract
+-  Battle-tested on thousands of PDFs, a test suite and continuous integration
+
+For details: please consult the `release notes <RELEASE_NOTES.rst>`_.
+
+Motivation
+----------
+
+I searched the web for a free command line tool to OCR PDF files on
+Linux/UNIX: I found many, but none of them were really satisfying.
+
+-  Either they produced PDF files with misplaced text under the image (making copy/paste impossible) 
+-  Or they did not handle accents and multilingual characters
+-  Or they changed the resolution of the embedded images
+-  Or they generated ridiculously large PDF files
+-  Or they crashed when trying to OCR some of my PDF files
+-  Or they did not produce valid PDF files (even though they were readable with my current PDF reader)
+-  On top of that none of them produced PDF/A files (format dedicated for long time storage)
+
+...so I decided to develop my own tool (using various existing scripts
+as an inspiration). 
+
+Installation
+------------
+
+Linux, UNIX, and macOS are supported. Windows is not directly supported but there is a Docker image available that runs on Windows.
+
+Users of Debian 9 or later or Ubuntu 16.10 or later may simply
+``apt-get install ocrmypdf``.
+
+For everyone else, `see our documentation <https://ocrmypdf.readthedocs.io/en/latest/installation.html>`_ for installation steps.
+
+Languages
+---------
+
+OCRmyPDF uses Tesseract for OCR, and relies on its language packs. For Linux users,
+you can often find packages that provide language packs:
+
+.. code-block:: bash
+
+   # Display a list of all Tesseract language packs
+   apt-cache search tesseract-ocr
+
+   # Debian/Ubuntu users
+   apt-get install tesseract-ocr-chi-sim  # Example: Install Chinese Simplified language back
+   
+You can then pass the ``-l LANG`` argument to OCRmyPDF to give a hint as to what languages it should search for. Multiple
+languages can be requested.
+
+Documentation and support
+-------------------------
+
+Once ocrmypdf is installed, the built-in help which explains the command syntax and options can be accessed via:
+
+.. code-block:: bash
+
+   ocrmypdf --help
+
+Our `documentation is served on Read the Docs <https://ocrmypdf.readthedocs.io/en/latest/index.html>`_.
+
+If you detect an issue, please:
+
+-  Check whether your issue is already known
+-  If no problem report exists on github, please create one here:
+   https://github.com/jbarlow83/OCRmyPDF/issues
+-  Describe your problem thoroughly
+-  Append the console output of the script when running the debug mode
+   (``-v 1`` option)
+-  If possible provide your input PDF file as well as the content of the
+   temporary folder (using a file sharing service like Dropbox)
+
+Press & Media
+-------------
+
+-  `c't 1-2014, page 59 <http://heise.de/-2279695>`_:
+   Detailed presentation of OCRmyPDF v1.0 in the leading German IT
+   magazine c't
+-  `heise Open Source, 09/2014: Texterkennung mit
+   OCRmyPDF <http://heise.de/-2356670>`_
+
+Disclaimer
+----------
+
+The software is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR
+CONDITIONS OF ANY KIND, either express or implied.

RELEASE_NOTES.md

@@ -1,37 +0,0 @@
-RELEASE NOTES
-=============
-
-Please always read this file before installing the package
-
-Download software here: https://github.com/fritz-hh/OCRmyPDF/tags
-
-v1.0-rc1 (2013-04-26):
-====
-
-New features
-------------
-
-- First release candidate
-
-Changes
--------
-
-- N/A
-
-Fixes
------
-
-- N/A
-
-Tested with
------------
-
-- Operating system: FreeBSD 9.1
-- Dependencies:
-   - poppler-utils 0.22.2
-   - ImageMagick 6.8.0-7 2013-03-30
-   - tesseract 3.02.02
-   - Python 2.7.3
-   - pdftk 1.45
-   - ghoscript (gs): 9.06
-   - java: openjdk version "1.7.0_17"

RELEASE_NOTES.rst

@@ -0,0 +1,435 @@
+RELEASE NOTES
+=============
+
+OCRmyPDF uses `semantic versioning <http://semver.org/>`_.
+
+
+v4.3:
+=====
+
+-  New feature ``--remove-background`` to detect and erase the background of color and grayscale images
+-  Better documentation
+-  Fixed an issue with PDFs that draw images when the raster stack depth is zero 
+-  ocrmypdf can now redirect its output to stdout for use in a shell pipeline
+
+   +  This does not improve performance since temporary files are still used for buffering
+   +  Some output validation is disabled in this mode
+
+v4.2.5:
+=======
+
+-  Fixed an issue (#100) with PDFs that omit the optional /BitsPerComponent parameter on images
+-  Removed non-free file milk.pdf
+
+
+v4.2.4:
+=======
+
+-  Fixed an error (#90) caused by PDFs that use stencil masks properly
+-  Fixed handling of PDFs that try to draw images or stencil masks without properly setting up the graphics state (such images are now ignored for the purposes of calculating DPI)
+
+v4.2.3:
+=======
+
+-  Fixed an issue with PDFs that store page rotation (/Rotate) in an indirect object
+-  Integrated a few fixes to simplify downstream packaging (Debian)
+
+   +  The test suite no longer assumes it is installed
+   +  If running Linux, skip a test that passes Unicode on the command line
+
+-  Added a test case to check explicit masks and stencil masks
+-  Added a test case for indirect objects and linearized PDFs
+-  Deprecated the OCRmyPDF.sh shell script
+
+
+v4.2.2:
+=======
+
+-  Improvements to documentation
+
+
+v4.2.1:
+=======
+
+-  Fixed an issue where PDF pages that contained stencil masks would report an incorrect DPI and cause Ghostscript to abort
+-  Implemented stdin streaming
+
+
+v4.2:
+=====
+
+-  ocrmypdf will now try to convert single image files to PDFs if they are provided as input (#15)
+
+   +  This is a basic convenience feature. It only supports a single image and always makes the image fill the whole page.
+   +  For better control over image to PDF conversion, use ``img2pdf`` (one of ocrmypdf's dependencies)
+
+-  New argument ``--output-type {pdf|pdfa}`` allows disabling Ghostscript PDF/A generation
+
+   +  ``pdfa`` is the default, consistent with past behavior
+   +  ``pdf`` provides a workaround for users concerned about the increase in file size from Ghostscript forcing JBIG2 images to CCITT and transcoding JPEGs
+   +  ``pdf`` preserves as much as it can about the original file, including problems that PDF/A conversion fixes
+
+-  PDFs containing images with "non-square" pixel aspect ratios, such as 200x100 DPI, are now handled and converted properly (fixing a bug that caused to be cropped)
+-  ``--force-ocr`` rasterizes pages even if they contain no images
+
+   +  supports users who want to use OCRmyPDF to reconstruct text information in PDFs with damaged Unicode maps (copy and paste text does not match displayed text)
+   +  supports reinterpreting PDFs where text was rendered as curves for printing, and text needs to be recovered
+   +  fixes issue #82
+
+-  Fixes an issue where, with certain settings, monochrome images in PDFs would be converted to 8-bit grayscale, increasing file size (#79)
+-  Support for Ubuntu 12.04 LTS "precise" has been dropped in favor of (roughly) Ubuntu 14.04 LTS "trusty" 
+
+   +  Some Ubuntu "PPAs" (backports) are needed to make it work
+      
+-  Support for some older dependencies dropped
+
+   +  Ghostscript 9.15 or later is now required (available in Ubuntu trusty with backports)
+   +  Tesseract 3.03 or later is now required (available in Ubuntu trusty)
+
+-  Ghostscript now runs in "safer" mode where possible
+
+v4.1.4:
+=======
+
+-  Bug fix: monochrome images with an ICC profile attached were incorrectly converted to full color images if lossless reconstruction was not possible due to other settings; consequence was increased file size for these images
+
+
+v4.1.3:
+=======
+
+-  More helpful error message for PDFs with version 4 security handler
+-  Update usage instructions for Windows/Docker users
+-  Fix order of operations for matrix multiplication (no effect on most users)
+-  Add a few leptonica wrapper functions (no effect on most users)
+
+
+v4.1.2:
+=======
+
+-  Replace IEC sRGB ICC profile with Debian's sRGB (from icc-profiles-free) which is more compatible with the MIT license
+-  More helpful error message for an error related to certain types of malformed PDFs
+
+
+v4.1:
+=====
+
+-  ``--rotate-pages`` now only rotates pages when reasonably confidence in the orientation. This behavior can be adjusted with the new argument ``--rotate-pages-threshold``
+-  Fixed problems in error checking if ``unpaper`` is uninstalled or missing at run-time
+-  Fixed problems with "RethrownJobError" errors during error handling that suppressed the useful error messages
+
+
+v4.0.7:
+=======
+
+-  Minor correction to Ghostscript output settings
+
+
+v4.0.6:
+=======
+
+-  Update install instructions
+-  Provide a sRGB profile instead of using Ghostscript's
+
+
+v4.0.5:
+=======
+
+-  Remove some verbose debug messages from v4.0.4
+-  Fixed temporary that wasn't being deleted
+-  DPI is now calculated correctly for cropped images, along with other image transformations
+-  Inline images are now checked during DPI calculation instead of rejecting the image
+
+v4.0.4:
+=======
+
+Released with verbose debug message turned on. Do not use. Skip to v4.0.5.
+
+
+v4.0.3:
+=======
+
+New features
+------------
+
+-  Page orientations detected are now reported in a summary comment
+
+
+Fixes
+-----
+
+-  Show stack trace if unexpected errors occur
+-  Treat "too few characters" error message from Tesseract as a reason to skip that page rather than
+   abort the file
+-  Docker: fix blank JPEG2000 issue by insisting on Ghostscript versions that have this fixed
+
+
+v4.0.2:
+=======
+
+Fixes
+-----
+
+-  Fixed compatibility with Tesseract 3.04.01 release, particularly its different way of outputting
+   orientation information
+-  Improved handling of Tesseract errors and crashes
+-  Fixed use of chmod on Docker that broke most test cases
+
+
+v4.0.1:
+=======
+
+Fixes
+-----
+
+-  Fixed a KeyError if tesseract fails to find page orientation information
+
+
+v4.0:
+=====
+
+New features
+------------
+
+-  Automatic page rotation (``-r``) is now available. It uses ignores any prior rotation information
+   on PDFs and sets rotation based on the dominant orientation of detectable text. This feature is
+   fairly reliable but some false positives occur especially if there is not much text to work with. (#4) 
+-  Deskewing is now performed using Leptonica instead of unpaper. Leptonica is faster and more reliable
+   at image deskewing than unpaper.
+
+
+Fixes
+-----
+
+-  Fixed an issue where lossless reconstruction could cause some pages to be appear incorrectly
+   if the page was rotated by the user in Acrobat after being scanned (specifically if it a /Rotate tag)
+-  Fixed an issue where lossless reconstruction could misalign the graphics layer with respect to
+   text layer if the page had been cropped such that its origin is not (0, 0) (#49)
+
+
+Changes
+-------
+
+-  Logging output is now much easier to read
+-  ``--deskew`` is now performed by Leptonica instead of unpaper (#25)
+-  libffi is now required
+-  Some changes were made to the Docker and Travis build environments to support libffi
+-  ``--pdf-renderer=tesseract`` now displays a warning if the Tesseract version is less than 3.04.01,
+   the planned release that will include fixes to an important OCR text rendering bug in Tesseract 3.04.00.
+   You can also manually install ./share/sharp2.ttf on top of pdf.ttf in your Tesseract tessdata folder
+   to correct the problem.
+
+
+v3.2.1:
+=======
+
+Changes
+-------
+
+-  Fixed issue #47 "convert() got and unexpected keyword argument 'dpi'" by upgrading to img2pdf 0.2
+-  Tweaked the Dockerfiles
+
+
+v3.2:
+=====
+
+New features
+------------
+
+-  Lossless reconstruction: when possible, OCRmyPDF will inject text layers without 
+   otherwise manipulating the content and layout of a PDF page. For example, a PDF containing a mix
+   of vector and raster content would see the vector content preserved. Images may still be transcoded
+   during PDF/A conversion.  (``--deskew`` and ``--clean-final`` disable this mode, necessarily.)
+-  New argument ``--tesseract-pagesegmode`` allows you to pass page segmentation arguments to Tesseract OCR.
+   This helps for two column text and other situations that confuse Tesseract.
+-  Added a new "polyglot" version of the Docker image, that generates Tesseract with all languages packs installed,
+   for the polyglots among us. It is much larger.
+
+Changes
+-------
+
+-  JPEG transcoding quality is now 95 instead of the default 75. Bigger file sizes for less degradation.
+
+
+
+v3.1.1:
+=======
+
+Changes
+-------
+
+-  Fixed bug that caused incorrect page size and DPI calculations on documents with mixed page sizes
+
+v3.1:
+=====
+
+Changes
+-------
+
+-  Default output format is now PDF/A-2b instead of PDF/A-1b
+-  Python 3.5 and OS X El Capitan are now supported platforms - no changes were
+   needed to implement support
+-  Improved some error messages related to missing input files
+-  Fixed issue #20 - uppercase .PDF extension not accepted
+-  Fixed an issue where OCRmyPDF failed to text that certain pages contained previously OCR'ed text, 
+   such as OCR text produced by Tesseract 3.04
+-  Inserts /Creator tag into PDFs so that errors can be traced back to this project
+-  Added new option ``--pdf-renderer=auto``, to let OCRmyPDF pick the best PDF renderer. 
+   Currently it always chooses the 'hocrtransform' renderer but that behavior may change.
+-  Set up Travis CI automatic integration testing
+
+v3.0:
+=====
+
+New features
+------------
+
+-  Easier installation with a Docker container or Python's ``pip`` package manager 
+-  Eliminated many external dependencies, so it's easier to setup
+-  Now installs ``ocrmypdf`` to ``/usr/local/bin`` or equivalent for system-wide
+   access and easier typing
+-  Improved command line syntax and usage help (``--help``)
+-  Tesseract 3.03+ PDF page rendering can be used instead for better positioning
+   of recognized text (``--pdf-renderer tesseract``)
+-  PDF metadata (title, author, keywords) are now transferred to the 
+   output PDF
+-  PDF metadata can also be set from the command line (``--title``, etc.)
+-  Automatic repairs malformed input PDFs if possible
+-  Added test cases to confirm everything is working
+-  Added option to skip extremely large pages that take too long to OCR and are 
+   often not OCRable (e.g. large scanned maps or diagrams); other pages are still
+   processed (``--skip-big``)
+-  Added option to kill Tesseract OCR process if it seems to be taking too long on
+   a page, while still processing other pages (``--tesseract-timeout``)
+-  Less common colorspaces (CMYK, palette) are now supported by conversion to RGB
+-  Multiple images on the same PDF page are now supported
+
+Changes
+-------
+
+-  New, robust rewrite in Python 3.4+ with ruffus_ pipelines
+-  Now uses Ghostscript 9.14's improved color conversion model to preserve PDF colors
+-  OCR text is now rendered in the PDF as invisible text. Previous versions of OCRmyPDF
+   incorrectly rendered visible text with an image on top.
+-  All "tasks" in the pipeline can be executed in parallel on any
+   available CPUs, increasing performance
+-  The ``-o DPI`` argument has been phased out, in favor of ``--oversample DPI``, in
+   case we need ``-o OUTPUTFILE`` in the future
+-  Removed several dependencies, so it's easier to install.  We no 
+   longer use:
+   
+   - GNU parallel_
+   - ImageMagick_
+   - Python 2.7
+   - Poppler
+   - MuPDF_ tools
+   - shell scripts
+   - Java and JHOVE_
+   - libxml2
+
+-  Some new external dependencies are required or optional, compared to v2.x:
+
+   - Ghostscript 9.14+
+   - qpdf_ 5.0.0+
+   - Unpaper_ 6.1 (optional)
+   - some automatically managed Python packages
+  
+.. _ruffus: http://www.ruffus.org.uk/index.html
+.. _parallel: https://www.gnu.org/software/parallel/
+.. _ImageMagick: http://www.imagemagick.org/script/index.php
+.. _MuPDF: http://mupdf.com/docs/
+.. _qpdf: http://qpdf.sourceforge.net/
+.. _Unpaper: https://github.com/Flameeyes/unpaper
+.. _JHOVE: http://jhove.sourceforge.net/
+
+Release candidates
+------------------
+
+-  rc9:
+
+   - fix issue #118: report error if ghostscript iccprofiles are missing
+   - fixed another issue related to #111: PDF rasterized to palette file
+   - add support image files with a palette
+   - don't try to validate PDF file after an exception occurs
+
+-  rc8:
+
+   - fix issue #111: exception thrown if PDF is missing DocumentInfo dictionary
+
+-  rc7:
+
+   - fix error when installing direct from pip, "no such file 'requirements.txt'"
+
+-  rc6:
+
+   - dropped libxml2 (Python lxml) since Python 3's internal XML parser is sufficient
+   - set up Docker container
+   - fix Unicode errors if recognized text contains Unicode characters and system locale is not UTF-8
+
+-  rc5:
+
+   - dropped Java and JHOVE in favour of qpdf
+   - improved command line error output
+   - additional tests and bug fixes
+   - tested on Ubuntu 14.04 LTS
+
+-  rc4:
+
+   - dropped MuPDF in favour of qpdf
+   - fixed some installer issues and errors in installation instructions
+   - improve performance: run Ghostscript with multithreaded rendering
+   - improve performance: use multiple cores by default
+   - bug fix: checking for wrong exception on process timeout 
+
+-  rc3: skipping version number intentionally to avoid confusion with Tesseract
+-  rc2: first release for public testing to test-PyPI, Github
+-  rc1: testing release process
+
+Compatibility notes
+-------------------
+
+-  ``./OCRmyPDF.sh`` script is still available for now
+-  Stacking the verbosity option like ``-vvv`` is no longer supported
+
+-  The configuration file ``config.sh`` has been removed.  Instead, you can
+   feed a file to the arguments for common settings:
+
+::
+
+   ocrmypdf input.pdf output.pdf @settings.txt
+
+where ``settings.txt`` contains *one argument per line*, for example:
+
+::
+
+   -l 
+   deu 
+   --author 
+   A. Merkel 
+   --pdf-renderer 
+   tesseract
+
+
+Fixes
+-----
+
+-  Handling of filenames containing spaces: fixed
+
+Notes and known issues
+----------------------
+
+-  Some dependencies may work with lower versions than tested, so try
+   overriding dependencies if they are "in the way" to see if they work.
+
+-  ``--pdf-renderer tesseract`` will output files with an incorrect page size in Tesseract 3.03,
+   due to a bug in Tesseract.
+
+-  PDF files containing "inline images" are not supported and won't be for the 3.0 release. Scanned
+   images almost never contain inline images.
+
+
+v2.2-stable (2014-09-29):
+=========================
+
+OCRmyPDF versions 1 and 2 were implemented as shell scripts. OCRmyPDF 3.0+ is a fork that gradually replaced all shell scripts with Python while maintaining the existing command line arguments. No one is maintaining old versions.
+
+For details on older versions, see the `final version of its release notes <https://github.com/fritz-hh/OCRmyPDF/blob/7fd3dbdf42ca53a619412ce8add7532c5e81a9d1/RELEASE_NOTES.md>`_.

dev_requirements.txt

@@ -0,0 +1,4 @@
+check-manifest>=0.33
+setuptools-scm>=1.11.1
+twine>=1.8.1
+coverage>=4.2

docker-wrapper.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+. /appenv/bin/activate
+cd /home/docker
+exec ocrmypdf "$@"

docs/bitmap_vs_svg.svg

@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<svg xmlns="http://www.w3.org/2000/svg" width="100%" height="100%" viewBox="0 0 915 585" xmlns:xlink="http://www.w3.org/1999/xlink">
+<defs>
+<linearGradient id="b" y2="445" gradientUnits="userSpaceOnUse" y1="179" gradientTransform="translate(0 -2.06)" x2="-29.7" x1="322">
+<stop stop-color="#333" offset="0"/>
+<stop stop-color="#fff" stop-opacity="0" offset="1"/>
+</linearGradient>
+<linearGradient id="a" y2="414" gradientUnits="userSpaceOnUse" y1="159" x2="490" x1="815">
+<stop stop-color="#33f" offset="0"/>
+<stop stop-color="#3f3fff" stop-opacity="0" offset="1"/>
+</linearGradient>
+</defs>
+<path fill="url(#b)" d="m403 247c-12 115-135 122-368 123-4.3-1.07-7.32-7.33-6-41 76-37 151-124 167-236 93 123 201 40.9 207 154z"/>
+<g stroke-width="3.45" fill="none">
+<path stroke="#000" d="m11.8 11.8h411v411l-411 0.01v-411z"/>
+<path stroke="#448" d="m489 11.7h415v411h-415v-411z"/>
+</g>
+<path d="m876 244c-12 115-133 120-366 121-6-14-10-40-3-43 76-37.3 136-106 152-218 38 48 209 101 217 140z" fill="url(#a)"/>
+<g id="RasterLarge" transform="matrix(1.36 0 0 1.28 -161 -636)">
+<path fill="#999" d="m287 730h-30v-60h20v20h10v10h10v10h20v10h40v-10h20v-20h10v-20h-10v-10h-10v-10h-40v-10h-30v-10h-20v-10h-10v-10h-10v-60h10v-10h10v-10h10v-10h90v10h30v60h-20v-10h-10v-20h-10v-10h-20v-10h-30v10h-20v10h-10v20h10v20h30v10h30v10h30v10h10v10h10v10h10v60h-10v10h-10v10h-10v10h-100v-10z"/>
+<path fill="#555" d="m297 730h-30v-10h-10v-50h20v20h10v20h10 10v10h60v-10h10v-10h10v-40h-20v-10h-20v-10h-40v-10h-20v-10h-20v-20h-10v-50h10v-10h10v-10h20v-10h70v10h30v10h10v50h-20v-20h-10v-20h-20v-10h-50v10h-10v10h-10v30h10v10h20v10h30v10h30v10h20v10h10v10h10v50h-10v20h-10v10h-20v10h-80z"/>
+<path d="m307 730h-30v-10h-20v-50h20v30h10v10h10v10h70v-10h20v-50h-10v-10h-20v-10h-40v-10h-30v-10h-10v-10h-10v-20h-10v-30h10v-20h20v-10h20v-10h50v10h30v10h20v50h-20v-30h-10v-10h-10v-10h-70v10h-10v40h10v10h10v10h30v10h40v10h20v10h10v20h10v40h-10v20h-20v10h-30v10h-50v-10z"/>
+</g>
+<g font-size="40" font-family="sans-serif" text-anchor="middle">
+<g font-size="100">
+<text y="518" x="210">Raster</text>
+<text y="518" x="695" fill="#338">Vector</text>
+</g>
+<text y="563" x="210">.jpeg  .gif  .png</text>
+<text y="563" x="696" fill="#338">.svg</text>
+</g>
+<path id="VectorLarge" fill="#005" d="m661 294v-62.5l23.4 0.184c0.678 20.8 7.32 36.3 19.9 46.4 12.7 9.93 32.1 14.9 57.9 14.9 24.1 0 42.5-4.29 55.1-12.9 12.7-8.71 19.1-21.3 19.1-37.9 0-13.2-3.86-23.4-11.6-30.5-7.59-7.11-23.7-14-48.4-20.8l-40.1-10.9c-29-7.97-49.5-17.9-61.4-29.8-11.8-11.9-17.7-28.2-17.7-48.9 0-23.3 9.15-41.4 27.4-54.3 18.3-12.9 44-19.3 77.1-19.3 14.1 0 29.6 1.41 46.4 4.23 16.8 2.7 34.7 6.68 53.7 12v58.5h-23c-2.3-19.4-9.49-33.4-21.6-41.9-11.9-8.71-30.2-13.1-54.7-13.1-21.4 0-37.7 3.99-49 12-11.1 7.85-16.7 19.3-16.7 34.4 0 13.1 4.2 23.4 12.6 30.9 8.4 7.48 26.2 14.9 53.5 22.3l37.6 10.1c27.5 7.48 47.1 17 58.8 28.7 11.8 11.5 17.7 27 17.7 46.5 0 26.6-9.42 46.7-28.3 60.2s-46.9 20.2-84.2 20.2c-16.7 0-33.7-1.53-51-4.6-18-3-35-7-53-13z"/>
+<use xlink:href="#VectorLarge" transform="matrix(.17 0 0 .17 392 313)"/>
+<use xlink:href="#RasterLarge" transform="matrix(.173 0 0 .173 -8.25 314)" height="100%" width="100%" y="0" x="0"/>
+</svg>

docs/conf.py

@@ -0,0 +1,350 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+#
+# ocrmypdf documentation build configuration file, created by
+# sphinx-quickstart on Sun Sep  4 14:29:43 2016.
+#
+# This file is execfile()d with the current directory set to its
+# containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+#
+# import os
+# import sys
+# sys.path.insert(0, os.path.abspath('.'))
+
+# -- General configuration ------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
+# ones.
+extensions = [
+    'sphinx.ext.mathjax',
+]
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
+#
+# source_suffix = ['.rst', '.md']
+source_suffix = '.rst'
+
+# The encoding of source files.
+#
+# source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = 'ocrmypdf'
+copyright = '2016, James R. Barlow'
+author = 'James R. Barlow'
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+from ocrmypdf import VERSION as OCRMYPDF_VERSION
+
+_version_parts = OCRMYPDF_VERSION.split('.')
+
+version = '.'.join(_version_parts[0:2])
+# The full version, including alpha/beta/rc tags.
+release = OCRMYPDF_VERSION
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#
+# This is also used if you do content translation via gettext catalogs.
+# Usually you set "language" from the command line for these cases.
+language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+#
+# today = ''
+#
+# Else, today_fmt is used as the format for a strftime call.
+#
+today_fmt = '%Y-%m-%d'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This patterns also effect to html_static_path and html_extra_path
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+# The reST default role (used for this markup: `text`) to use for all
+# documents.
+#
+# default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+#
+# add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+#
+# add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+#
+# show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# A list of ignored prefixes for module index sorting.
+# modindex_common_prefix = []
+
+# If true, keep warnings as "system message" paragraphs in the built documents.
+# keep_warnings = False
+
+# If true, `todo` and `todoList` produce output, else they produce nothing.
+todo_include_todos = False
+
+
+# -- Options for HTML output ----------------------------------------------
+
+import sphinx_rtd_theme
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'sphinx_rtd_theme'
+html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further.  For a list of options available for each theme, see the
+# documentation.
+#
+html_theme_options = {
+    'display_version': False
+}
+
+# Add any paths that contain custom themes here, relative to this directory.
+# html_theme_path = []
+
+# The name for this set of Sphinx documents.
+# "<project> v<release> documentation" by default.
+#
+# html_title = 'ocrmypdf v4.2'
+
+# A shorter title for the navigation bar.  Default is the same as html_title.
+#
+# html_short_title = None
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+#
+# html_logo = None
+
+# The name of an image file (relative to this directory) to use as a favicon of
+# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+#
+# html_favicon = None
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+# Add any extra paths that contain custom files (such as robots.txt or
+# .htaccess) here, relative to this directory. These files are copied
+# directly to the root of the documentation.
+#
+# html_extra_path = []
+
+# If not None, a 'Last updated on:' timestamp is inserted at every page
+# bottom, using the given strftime format.
+# The empty string is equivalent to '%b %d, %Y'.
+#
+# html_last_updated_fmt = None
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+#
+# html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+#
+# html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+#
+# html_additional_pages = {}
+
+# If false, no module index is generated.
+#
+# html_domain_indices = True
+
+# If false, no index is generated.
+#
+# html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+#
+# html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+#
+# html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
+#
+# html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
+#
+# html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it.  The value of this option must be the
+# base URL from which the finished HTML is served.
+#
+# html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+# html_file_suffix = None
+
+# Language to be used for generating the HTML full-text search index.
+# Sphinx supports the following languages:
+#   'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja'
+#   'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr', 'zh'
+#
+# html_search_language = 'en'
+
+# A dictionary with options for the search language support, empty by default.
+# 'ja' uses this config value.
+# 'zh' user can custom change `jieba` dictionary path.
+#
+# html_search_options = {'type': 'default'}
+
+# The name of a javascript file (relative to the configuration directory) that
+# implements a search results scorer. If empty, the default will be used.
+#
+# html_search_scorer = 'scorer.js'
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'ocrmypdfdoc'
+
+# -- Options for LaTeX output ---------------------------------------------
+
+latex_elements = {
+     # The paper size ('letterpaper' or 'a4paper').
+     #
+     # 'papersize': 'letterpaper',
+
+     # The font size ('10pt', '11pt' or '12pt').
+     #
+     # 'pointsize': '10pt',
+
+     # Additional stuff for the LaTeX preamble.
+     #
+     # 'preamble': '',
+
+     # Latex figure (float) alignment
+     #
+     # 'figure_align': 'htbp',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title,
+#  author, documentclass [howto, manual, or own class]).
+latex_documents = [
+    (master_doc, 'ocrmypdf.tex', 'ocrmypdf Documentation',
+     'James R. Barlow', 'manual'),
+]
+
+# The name of an image file (relative to this directory) to place at the top of
+# the title page.
+#
+# latex_logo = None
+
+# For "manual" documents, if this is true, then toplevel headings are parts,
+# not chapters.
+#
+# latex_use_parts = False
+
+# If true, show page references after internal links.
+#
+# latex_show_pagerefs = False
+
+# If true, show URL addresses after external links.
+#
+# latex_show_urls = False
+
+# Documents to append as an appendix to all manuals.
+#
+# latex_appendices = []
+
+# It false, will not define \strong, \code, 	itleref, \crossref ... but only
+# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
+# packages.
+#
+# latex_keep_old_macro_names = True
+
+# If false, no module index is generated.
+#
+# latex_domain_indices = True
+
+
+# -- Options for manual page output ---------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+    (master_doc, 'ocrmypdf', 'ocrmypdf Documentation',
+     [author], 1)
+]
+
+# If true, show URL addresses after external links.
+#
+# man_show_urls = False
+
+
+# -- Options for Texinfo output -------------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+#  dir menu entry, description, category)
+texinfo_documents = [
+    (master_doc, 'ocrmypdf', 'ocrmypdf Documentation',
+     author, 'ocrmypdf', 'One line description of project.',
+     'Miscellaneous'),
+]
+
+# Documents to append as an appendix to all manuals.
+#
+# texinfo_appendices = []
+
+# If false, no module index is generated.
+#
+# texinfo_domain_indices = True
+
+# How to display URL addresses: 'footnote', 'no', or 'inline'.
+#
+# texinfo_show_urls = 'footnote'
+
+# If true, do not generate a @detailmenu in the "Top" node's menu.
+#
+# texinfo_no_detailmenu = False

docs/cookbook.rst

@@ -0,0 +1,139 @@
+Cookbook
+========
+
+Basic examples
+--------------
+
+Help!
+"""""
+
+ocrmypdf has built-in help.
+
+.. code-block:: bash
+
+	ocrmypdf --help
+
+
+Add an OCR layer and convert to PDF/A
+"""""""""""""""""""""""""""""""""""""
+
+.. code-block:: bash
+
+	ocrmypdf input.pdf output.pdf
+
+Add an OCR layer and output a standard PDF
+""""""""""""""""""""""""""""""""""""""""""
+
+.. code-block:: bash
+
+	ocrmypdf --output-type pdf input.pdf output.pdf
+
+Modify a file in place
+""""""""""""""""""""""
+
+The file will only be overwritten if OCRmyPDF is successful.
+
+.. code-block:: bash
+
+	ocrmypdf myfile.pdf myfile.pdf
+
+Correct page rotation
+"""""""""""""""""""""
+
+OCR will attempt to automatic correct the rotation of each page. This can help fix a scanning job that contains a mix of landscape and portrait pages.
+
+.. code-block:: bash
+
+	ocrmypdf --rotate-pages myfile.pdf myfile.pdf
+
+You can increase (decrease) the parameter ``--rotate-pages-threshold`` to make page rotation more (less) aggressive.
+
+
+OCR images, not PDFs
+--------------------
+
+Use a program like `img2pdf <https://gitlab.mister-muffin.de/josch/img2pdf>`_ to convert your images to PDFs, and then pipe the resutls to run ocrmypdf:
+
+.. code-block:: bash
+
+	img2pdf my-images*.jpg | ocrmypdf - myfile.pdf
+
+If given a single image as input, OCRmyPDF will try converting it to a PDF on its own.  This feature may be removed at some point, because OCRmyPDF does not specialize in converting images to PDFs.
+
+You can also use Tesseract 3.04+ directly to convert single page images or multi-page TIFFs to PDF:
+
+.. code-block:: bash
+
+	tesseract my-image.jpg output-prefix pdf 
+
+Image processing
+----------------
+
+OCRmyPDF perform some image processing on each page of a PDF, if desired.  The same processing is applied to each page.  It is suggested that the user review files after image processing as these commands might remove desirable content, especially from poor quality scans.
+
+* ``--rotate-pages`` attempts to determine the correct orientation for each page and rotates the page if necessary.
+
+* ``--remove-background`` attempts to detect and remove a noisy background from grayscale or color images.  Monochrome images are ignored. This should not be used on documents that contain color photos as it may remove them.
+
+* ``--deskew`` will correct pages were scanned at a skewed angle by rotating them back into place.  Skew determination and correction is performed using `Postl's variance of line sums <http://www.leptonica.com/skew-measurement.html>`_ algorithm as implemented in `Leptonica <http://www.leptonica.com/index.html>`_.
+  
+* ``--clean`` uses `unpaper <https://www.flameeyes.eu/projects/unpaper>`_ to clean up pages before OCR, but does not alter the final output.  This makes it less likely that OCR will try to find text in background noise.
+
+* ``--clean-final`` uses unpaper to clean up pages before OCR and inserts the page into the final output.  You will want to review each page to ensure that unpaper did not remove something important.
+
+
+OCR and correct document skew (crooked scan)
+""""""""""""""""""""""""""""""""""""""""""""
+
+.. code-block:: bash
+
+	ocrmypdf --deskew input.pdf output.pdf
+
+
+Hot (watched) folders
+---------------------
+
+To set up a "hot folder" that will trigger an OCR operation for every file inserted, use a program like Python `watchdog <https://pypi.python.org/pypi/watchdog>`_ (supports all major OS).
+
+.. code-block:: bash
+
+	pip install watchdog
+
+watchdog installs the command line program ``watchmedo``, which can be told to run ``ocrmypdf`` on any .pdf added to the current directory (``.``) and place the result in the previously created ``out/`` folder.
+
+.. code-block:: bash
+
+	cd hot-folder
+	mkdir out
+	watchmedo shell-command \
+		--patterns="*.pdf" \
+		--command='ocrmypdf "${watch_src_path}" "out/${watch_src_path}" ' \
+		.  # don't forget the final dot
+
+For more complex behavior you can write a Python script around to use the watchdog API.
+
+On file servers, you could configure watchmedo as a system service so it will run all the time.
+
+
+Caveats
+"""""""
+
+* ``watchmedo`` may not work properly on a networked file system, depending on the capabilities of the file system client and server.
+* This simple recipe does not filter for the type of file system event, so file copies, deletes and moves, and directory operations, will all be sent to ocrmypdf, producing errors in several cases. Disable your watched folder if you are doing anything other than copying files to it.
+
+
+Batch jobs
+----------
+
+Consider using the excellent `GNU Parallel <https://www.gnu.org/software/parallel/>`_ to apply OCRmyPDF to multiple files at once.
+
+Both ``parallel`` and ``ocrmypdf`` will try to use all available processors. To maximize parallelism without overloading your system with processes, consider using ``parallel -j 2`` to limit parallel to running two jobs at once.
+
+This command will run all ocrmypdf all files named ``*.pdf`` in the current directory and write them to the previous created ``output/`` folder.
+
+.. code-block:: bash
+
+	parallel -j 2 ocrmypdf '{}' 'output/{}' ::: *.pdf
+
+If you have thousands of files to work with, contact the author.
+ 

docs/errors.rst

@@ -0,0 +1,33 @@
+Common error messages
+=====================
+
+Page already has text
+---------------------
+
+.. code::
+
+	ERROR -    1: page already has text! – aborting (use --force-ocr to force OCR)
+
+You ran ocrmypdf on a file that already contains printable text or a hidden OCR text layer (it can't quite tell the difference). You probably don't want to do this, because the file is already searchable.
+
+As the error message suggests, your options are:
+
+- ``ocrmypdf --force-ocr`` to :ref:`rasterize <raster-vector>` all vector content and run OCR on the images. This is useful if a previous OCR program failed, or if the document contains a text watermark.
+
+- ``ocrmypdf --skip-text`` to skip OCR and other processing on any pages that contain text. Text pages will be copied into the output PDF without modification.
+
+
+Input file 'filename' is not a valid PDF
+----------------------------------------
+
+OCRmyPDF passes files through qpdf, a program that fixes errors in PDFs, before it tries to work on them. In most cases this happens because the PDF is corrupt and
+truncated (incomplete file copying) and not much can be done.
+
+You can try rewriting the file with Ghostscript or pdftk:
+
+- ``gs -o output.pdf -dSAFER -sDEVICE=pdfwrite input.pdf``
+
+- ``pdftk input.pdf cat output output.pdf``
+
+Sometimes Acrobat can repair PDFs with its `Preflight tool <https://helpx.adobe.com/acrobat/using/correcting-problem-areas-preflight-tool.html>`_.
+

docs/index.rst

@@ -0,0 +1,33 @@
+.. ocrmypdf documentation master file, created by
+   sphinx-quickstart on Sun Sep  4 14:29:43 2016.
+   You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+OCRmyPDF documentation
+======================
+
+OCRmyPDF adds an OCR text layer to scanned PDF files, allowing them to
+be searched.
+
+PDFs are the best format for scanned documents.  Unfortunately, PDFs can be difficult to work with. OCRmyPDF makes it easy to apply image processing and OCR to existing PDFs.
+
+Contents:
+
+.. toctree::
+   :maxdepth: 2
+
+   introduction
+   installation
+   languages
+   cookbook
+   errors
+
+
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
+

docs/installation.rst

@@ -0,0 +1,269 @@
+Installation
+============
+
+Installing on Debian and Ubuntu
+-------------------------------
+
+Users of Debian 9 ("stretch") or later or Ubuntu 16.10 or later may simply
+
+.. code-block:: bash
+
+	apt-get install ocrmypdf
+
+.. _Docker:
+
+Installing the Docker image
+---------------------------
+
+For many users, installing the Docker image will be easier than installing all of OCRmyPDF's dependencies. For Windows, it is the only option.
+
+If you have `Docker <https://docs.docker.com/>`_ installed on your system, you can install
+a Docker image of the latest release.
+
+Follow the Docker installation instructions for your platform.  If you can run this command
+successfully, your system is ready to download and execute the image:
+
+.. code-block:: bash
+
+   docker run hello-world
+   
+OCRmyPDF will use all available CPU cores.  By default, the VirtualBox machine instance on Windows and OS X has only a single CPU core enabled. Use the VirtualBox Manager to determine the name of your Docker engine host, and then follow these optional steps to enable multiple CPUs:
+
+.. code-block:: bash
+
+   # Optional step for Mac OS X users
+   docker-machine stop "yourVM"
+   VBoxManage modifyvm "yourVM" --cpus 2  # or whatever number of core is desired
+   docker-machine start "yourVM"
+   eval $(docker-machine env "yourVM")
+
+Assuming you have a Docker engine running somewhere, you can run these commands to download
+the image:
+
+.. code-block:: bash
+
+   docker pull jbarlow83/ocrmypdf
+
+Then tag it to give a more convenient name, just ocrmypdf:
+
+.. code-block:: bash
+
+   docker tag jbarlow83/ocrmypdf ocrmypdf
+
+.. _docker-polyglot:
+
+This image contains language packs for English, French, Spanish and German. The alternative "polyglot" image provides `all available language packs <https://github.com/tesseract-ocr/tesseract/blob/master/doc/tesseract.1.asc#languages>`_:
+
+.. code-block:: bash
+
+   # Alternative step: If you need all language packs
+   docker pull jbarlow83/ocrmypdf-polyglot
+   docker tag jbarlow83/ocrmypdf-polyglot ocrmypdf
+
+You can then run ocrmypdf using the command:
+
+.. code-block:: bash
+
+   docker run --rm ocrmypdf --help
+  
+To execute the OCRmyPDF on a local file, you must `provide a writable volume to the Docker image <https://docs.docker.com/userguide/dockervolumes/>`_, and both the input and output file must be inside the writable volume.  This example command uses the current working directory as the writable volume:
+
+.. code-block:: bash
+
+   docker run --rm -v "$(pwd):/home/docker" <other docker arguments>   ocrmypdf <your arguments to ocrmypdf>
+
+In this worked example, the current working directory contains an input file called ``test.pdf`` and the output will go to ``output.pdf``: 
+
+.. code-block:: bash
+
+   docker run --rm -v "$(pwd):/home/docker"   ocrmypdf --skip-text test.pdf output.pdf
+
+Note that ``ocrmypdf`` has its own separate ``-v VERBOSITYLEVEL`` argument to control debug verbosity. All Docker arguments should before the ``ocrmypdf`` image name and all arguments to ``ocrmypdf`` should be listed after.
+
+
+Installing on macOS (formerly Mac OS X)
+---------------------------------------
+
+These instructions probably work on all macOS supported by Homebrew. OCRmyPDF is known to work on Yosemite and El Capitan, and regularly tested on El Capitan.
+
+If it's not already present, `install Homebrew <http://brew.sh/>`_.
+
+Update Homebrew:
+
+.. code-block:: bash
+
+   brew update
+   
+Install or upgrade the required Homebrew packages, if any are missing:
+
+.. code-block:: bash
+
+   brew install libpng openjpeg jbig2dec libtiff     # image libraries
+   brew install qpdf
+   brew install ghostscript
+   brew install python3
+   brew install libxml2 libffi leptonica
+   brew install unpaper   # optional
+   
+Install the required Tesseract OCR engine with the language packs you plan to use:
+   
+.. code-block:: bash
+
+   brew install tesseract                       # Option 1: for English, French, German, Spanish
+
+.. _macos-all-languages:
+
+.. code-block:: bash
+   
+   brew install tesseract --with-all-languages  # Option 2: for all language packs 
+   
+Update the homebrew pip and install Pillow:
+
+.. code-block:: bash
+
+   pip3 install --upgrade pip
+   pip3 install --upgrade pillow
+
+You can then install OCRmyPDF from PyPI:
+
+.. code-block:: bash
+
+   pip3 install ocrmypdf
+
+The command line program should now be available:
+
+.. code-block:: bash
+
+   ocrmypdf --help
+
+Installing on Ubuntu 14.04 LTS
+------------------------------
+
+Installing on Ubuntu 14.04 LTS (trusty) is more difficult than some other options, because of bugs in Python package installation.
+
+Add new "apt" repositories needed for backports of Ghostscript 9.16 and libav-11, which supports unpaper 6.1. This will replace Ghostscript on your system.
+
+.. code-block:: bash
+
+   sudo add-apt-repository ppa:vshn/ghostscript -y 
+   sudo add-apt-repository ppa:heyarje/libav-11 -y
+
+Update apt-get:
+
+.. code-block:: bash
+
+   sudo apt-get update
+   sudo apt-get upgrade
+   
+Install system dependencies:
+
+.. code-block:: bash
+
+   sudo apt-get install \
+      zlib1g-dev \
+      libjpeg-dev \
+      libffi-dev \
+      libavformat56 libavcodec56 libavutil54 \
+      ghostscript \
+      tesseract-ocr \
+      qpdf \
+      python3-pip \
+      python3-pil \
+      python3-pytest \
+      python3-reportlab
+
+If you wish install OCRmyPDF to the system Python, then install as follows (note this installs new packages
+into your system Python, which could interfere with other programs):
+
+.. code-block:: bash
+
+   sudo pip3 install ocrmypdf
+   
+If you wish to install OCRmyPDF to a virtual environment to isolate the system Python, you can
+follow these steps.  This includes a workaround `for a known, unresolved issue in Ubuntu 14.04's ensurepip
+package <http://www.thefourtheye.in/2014/12/Python-venv-problem-with-ensurepip-in-Ubuntu.html>`_:
+
+.. code-block:: bash
+
+   sudo apt-get install python3-venv
+   python3 -m venv venv-ocrmypdf --without-pip
+   source venv-ocrmypdf/bin/activate
+   wget -O - -o /dev/null https://bootstrap.pypa.io/get-pip.py | python
+   deactivate
+   python3 -m venv --system-site-packages venv-ocrmypdf
+   source venv-ocrmypdf/bin/activate
+   pip install ocrmypdf
+
+These installation instructions omit the optional dependency ``unpaper``, which is only available at version 0.4.2 in Ubuntu 14.04. The author could not find a backport of ``unpaper``, and created a .deb package to do the job of installing unpaper 6.1 (for x86 64-bit only):
+
+.. code-block:: bash
+
+   wget -q https://dl.dropboxusercontent.com/u/28971240/unpaper_6.1-1.deb -O unpaper_6.1-1.deb
+   sudo dpkg -i unpaper_6.1-1.deb
+
+
+Installing on Windows
+---------------------
+
+Direct installation on Windows is not possible.  Install the _`Docker` container as described above.  Ensure that your command prompt can run the docker "hello world" container.
+
+Running on Windows
+~~~~~~~~~~~~~~~~~~
+
+The command line syntax to run ocrmypdf from a command prompt will resemble:
+
+.. code-block:: bat
+
+   docker run -v /c/Users/sampleuser:/home/docker ocrmypdf --skip-text test.pdf output.pdf
+
+where /c/Users/sampleuser is a Unix representation of the Windows path C:\\Users\\sampleuser, assuming a user named "sampleuser" is running ocrmypdf on a file in their home directory, and the files "test.pdf" and "output.pdf" are in the sampleuser folder. The Windows user must have read and write permissions.
+      
+Installing HEAD revision from sources
+-------------------------------------
+
+If you have ``git`` and ``python3.4`` or ``python3.5`` installed, you can install from source. When the ``pip`` installer runs,
+it will alert you if dependencies are missing.
+
+To install the HEAD revision from sources in the current Python 3 environment:
+
+.. code-block:: bash
+
+   pip3 install git+https://github.com/jbarlow83/OCRmyPDF.git
+
+Or, to install in `development mode <https://pythonhosted.org/setuptools/setuptools.html#development-mode>`_,  allowing customization of OCRmyPDF, use the ``-e`` flag:
+
+.. code-block:: bash
+
+   pip3 install -e git+https://github.com/jbarlow83/OCRmyPDF.git
+   
+On certain Linux distributions such as Ubuntu, you may need to use 
+run the install command as superuser:
+
+.. code-block:: bash
+
+   sudo pip3 install [-e] git+https://github.com/jbarlow83/OCRmyPDF.git
+   
+Note that this will alter your system's Python distribution. If you prefer 
+to not install as superuser, you can install the package in a Python virtual environment:
+
+.. code-block:: bash
+
+   git clone -b master https://github.com/jbarlow83/OCRmyPDF.git
+   python3 -m venv
+   source venv/bin/activate
+   cd OCRmyPDF
+   pip3 install .
+
+However, ``ocrmypdf`` will only be accessible on the system PATH after
+you activate the virtual environment.
+
+To run the program:
+
+.. code-block:: bash
+   
+   ocrmypdf --help
+
+If not yet installed, the script will notify you about dependencies that
+need to be installed. The script requires specific versions of the
+dependencies. Older version than the ones mentioned in the release notes
+are likely not to be compatible to OCRmyPDF.

docs/introduction.rst

@@ -0,0 +1,71 @@
+Introduction
+============
+
+OCRmyPDF is a Python 3 package that adds OCR layers to PDFs.
+
+
+About OCR
+---------
+
+`Optical character recognition <https://en.wikipedia.org/wiki/Optical_character_recognition>`_ is technology that converts images of typed or handwritten text, such as in a scanned document, to computer text that can be searched and copied.
+
+OCRmyPDF uses `Tesseract <https://github.com/tesseract-ocr/tesseract>`_, the best available open source OCR engine, to perform OCR.
+
+.. _raster-vector:
+
+About PDFs
+----------
+
+PDFs are page description files that attempts to preserve a layout exactly. They can contain `vector graphic files <http://vector-conversions.com/vectorizing/raster_vs_vector.html>`_ that can contain raster objects such as scanned images. Because PDFs can contain multiple pages (unlike many image formats) and can contain fonts and text, it is a good formats for exchanging scanned documents.
+
+.. image:: bitmap_vs_svg.svg
+
+A PDF page might contain multiple images, even if it only appears to have one image.  Some scanners or scanning software will segment pages into monochromatic text and color regions for example, to improve the compression ratio and appearance of the page.
+
+Rasterizing a PDF is the process of generating an image suitable for display or analyzing with an OCR engine.  OCR engines like Tesseract work with images, not vector objects.
+
+
+About PDF/A
+-----------
+
+`PDF/A <https://en.wikipedia.org/wiki/PDF/A>`_ is a standardized subset of the full PDF specification that is designed for archiving.  PDF/A differs from PDF primarily by omitting features that would make it difficult to read the file in the future, such as embedded Javascript or references to external fonts.  All fonts and resources needed to interpret the PDF must be contained within it.  Generally speaking, scanned documents should be converted to PDF/A. There are various conformance levels and versions, such as "PDF/A-2b".
+
+Since most people who scan documents are interested in reading them in the future, OCRmyPDF generates PDF/A-2b by default.
+
+PDF/A has a few drawbacks.  Some PDF viewers include an alert that the file is a PDF/A, which may confuse some users.  It also tends to produce larger files than PDF, because it embeds certain resources even if they are commonly available. 
+
+What OCRmyPDF does
+------------------
+
+OCRmyPDF analyzes each page of a PDF to determine the colorspace and resolution (DPI) needed to capture all of the information on that page without losing content.  It uses `Ghostscript <http://ghostscript.com/>`_ to rasterize the page, and then performs on OCR on the rasterized image.  It is not enough to simply extract the images from each page and run OCR on them individually.  Of course one could use Ghostscript or another PDF rasterizer and then pass the image to Tesseract.  OCRmyPDF automates this process and produces a minimally changed output file that contains the same information, colorspace and resolution.
+
+The Tesseract OCR engine can output 'hOCR' files, which are XML files that contain a description of the text it found on the page.  OCRmyPDF will render a new PDF that contains only the hidden text layer, and merge this with the original page.
+
+Alternately, OCRmyPDF can use the Tesseract OCR engine to directly output PDFs for each page, then merge them.
+
+By default, OCRmyPDF will convert the file to a PDF/A.  This behavior can be disabled with the ``--output-type pdf`` argument.
+
+Depending on the settings selected, OCRmyPDF may "graft" the OCR layer into the existing PDF, or reconstruct a visually equivalent new PDF.
+
+
+Limitations
+-----------
+
+OCRmyPDF is limited by the Tesseract OCR engine.  As such it experiences these limitations, as do any other programs that rely on Tesseract:
+
+* The OCR is not as accurate as commercial solutions such as Abbyy.
+* It is not capable of recognizing handwriting.
+* It may find gibberish and report this as OCR output.
+* If a document contains languages outside of those given in the ``-l LANG`` arguments, results may be poor.
+* It is not always good at analyzing the natural reading order of documents. For example, it may fail to recognize that a document contains two columns and join text across the columns.
+* Poor quality scans may produce poor quality OCR. Garbage in, garbage out.
+  
+OCRmyPDF is also limited by the PDF specification:
+
+* PDF encodes the position of text glyphs but does not encode document structure.  There is no markup that divides a document in sections, paragraphs, sentences, or even words (since blank spaces are not represented). As such all elements of document structure including the spaces between words must be derived heuristically.  Some PDF viewers do a better job of this than others.
+
+Ghostscript also imposes some limitations:
+
+* PDFs containing JBIG2-encoded content will be converted to CCITT Group4 encoding, which has lower compression ratios, if Ghostscript PDF/A is enabled.
+  
+OCRmyPDF is currently not designed to be used as a Python API; it is designed to be run as a command line tool. ``import ocrmypf`` currently attempts to process the command line on ``sys.argv`` at import time so it has side effects that will interfere with its use as a package. The API it presents should not be considered stable.

docs/languages.rst

@@ -0,0 +1,46 @@
+Installing additional language packs
+====================================
+
+OCRmyPDF uses Tesseract for OCR, and relies on its language packs for languages other than English. 
+
+Tesseract supports `most languages <https://github.com/tesseract-ocr/tesseract/blob/master/doc/tesseract.1.asc#languages>`_.
+
+For Linux users, you can often find packages that provide language packs:
+
+Debian and Ubuntu users
+-----------------------
+
+.. code-block:: bash
+
+   # Display a list of all Tesseract language packs
+   apt-cache search tesseract-ocr
+
+   # Debian/Ubuntu users
+   apt-get install tesseract-ocr-chi-sim  # Example: Install Chinese Simplified language back
+   
+You can then pass the ``-l LANG`` argument to OCRmyPDF to give a hint as to what languages it should search for. Multiple
+languages can be requested.
+
+Mac OS X (macOS) users
+----------------------
+
+You can install additional language packs by :ref:`installing Tesseract using Homebrew with all language packs <macos-all-languages>`.
+
+Docker users
+------------
+
+Users of the Docker image may use the alternative :ref:`"polyglot" container <docker-polyglot>` which includes all languages.
+
+Known limitations
+-----------------
+
+As of v4.2, users of ocrmypdf working languages outside the Latin alphabet should use the following syntax:
+
+.. code-block:: bash
+
+	ocrmypdf --output-type pdf --pdf-renderer tesseract
+
+The reasons for this are:
+
+* The latest version of Ghostscript (9.19 as of this writing) has unfixed bugs in Unicode handling that generate invalid character maps, so Ghostscript cannot be used for PDF/A conversion
+* The default "hocr" PDF renderer does not handle Asian fonts properly

jhove/COPYING

@@ -1,502 +0,0 @@
-		  GNU LESSER GENERAL PUBLIC LICENSE
-		       Version 2.1, February 1999
-
- Copyright (C) 1991, 1999 Free Software Foundation, Inc.
-     59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
-[This is the first released version of the Lesser GPL.  It also counts
- as the successor of the GNU Library Public License, version 2, hence
- the version number 2.1.]
-
-			    Preamble
-
-  The licenses for most software are designed to take away your
-freedom to share and change it.  By contrast, the GNU General Public
-Licenses are intended to guarantee your freedom to share and change
-free software--to make sure the software is free for all its users.
-
-  This license, the Lesser General Public License, applies to some
-specially designated software packages--typically libraries--of the
-Free Software Foundation and other authors who decide to use it.  You
-can use it too, but we suggest you first think carefully about whether
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-
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jhove/LICENSE

@@ -1,17 +0,0 @@
-JHOVE - JSTOR/Harvard Object Validation Environment
-Copyright 2003-2008 by JSTOR and the President and Fellows of Harvard College
-
-This program is free software; you can redistribute it and/or modify
-it under the terms of the GNU Lessor General Public License as
-published by the Free Software Foundation; either version 2.1 of the
-License, or (at your option) any later version.
-
-This program is distributed in the hope that it will be useful, but
-WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-Lesser General Public License for more details.
-
-You should have received a copy of the GNU Lesser General Public
-License along with this program; if not, write to the Free Software
-Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
-USA

jhove/README

@@ -1,227 +0,0 @@
-JHOVE - JSTOR/Harvard Object Validation Environment
-Copyright 2003-2012 by JSTOR and the President and Fellows of Harvard College
-JHOVE is made available under the GNU Lesser General Public License (LGPL;
-see the file LICENSE for details)
-
-Rev. 1.9, 2012-12-17
-
-JHOVE (the JSTOR/Harvard Object Validation Environment, pronounced "jhove")
-is an extensible software framework for performing format identification,
-validation, and characterization of digital objects.
-
-o Format identification is the process of determining the format to which a
-  digital object conforms: "I have a digital object; what format is it?"
-o Format validation is the process of determining the level of compliance of a
-  digital object to the specification for its purported format: "I have an
-  object purportedly of format F; is it?"
-o Format characterization is the process of determing the format-specific
-  significant properties of an object of a given format: "I have an object of
-  format F; what are its salient properties?"
-
-These actions are frequently necessary during routine operation of digital
-repositories and for digital preservation activities.
-
-The output from JHOVE is controlled by output handlers. JHOVE uses an
-extensible plug-in architecture; it can be configured at the time of its
-invocation to include whatever specific format modules and output handlers
-that are desired. The initial release of JHOVE includes modules for
-arbitrary byte streams, ASCII and UTF-8 encoded text, AIFF and WAVE audio,
-GIF, JPEG, JPEG 2000, TIFF, and PDF; and text and XML output handlers.
-
-The JHOVE project is a collaboration of JSTOR and the Harvard University
-Library.  Development of JHOVE was funded in part by the Andrew W. Mellon
-Foundation.  JHOVE is made available under the GNU Lesser General Public
-License (LGPL; see the file LICENSE for details).
-
-JHOVE is currently being maintained by indpendent developers.
-
-REQUIREMENTS
-
-1. Java J2SE 1.5
-(JHOVE was originally implemented using the Sun J2SE SDK 1.4.1 and has
-been tested to work with 1.5)
-
-2. If you would like to compile the JHOVE source code, then
-Apache Ant, a Java-based build tool <http://ant.apache.org/> is necessary.
-Note that the JAVA_HOME environment variable must be set appropriately for
-Ant to work properly.
-(JHOVE was implemented and tested using Ant 1.5.1.)
-
-DISTRIBUTION
-
-The JHOVE distribution package includes:
-
-    jhove/                                 # JHOVE home directory
-          COPYING                          # GNU Lesser General Public License
-          LICENSE                          # JHOVE license information
-          README
-          RELEASENOTES                     # JHOVE release notes
-          bin/
-                    jhove.jar              # JHOVE API package
-                    jhove-handler.jar      # Standard output handler package
-                    jhove-module.jar       # Standard module package
-                    JhoveApp.jar           # JHOVE command line application
-                    JhoveView.jar          # JHOVE with Swing GUI front-end
-          build.xml                        # Ant configuration file
-          classes/
-                    build.xml              # Ant configuration file
-                    edu/ ...               # JHOVE API packages
-                    ADump.*                # AIFF dump utility class
-                    GDump.*                # GIF dump utility class
-                    Jhove.*                # JHOVE main class
-                    JDump.*                # JPEG dump utility class
-                    J2Dump.*               # JPEG 2000 dump utility class
-                    PDump.*                # PDF dump utility class
-                    TDump.*                # TIFF dump utility class
-                    UserHome.*             # user.home property utility class
-                    WDump.*                # WAVE dump utility class
-          conf/
-                   jhove.conf              # JHOVE configuration file
-                   jhove.xsd               # JHOVE output schema
-                   jhoveConfig.xsd         # JHOVE configuration file schema
-          doc/
-                   *.html                  # API documentation
-                   ...
-          examples/                        # Sample files
-                   ascii/ ...
-                   gif/   ...
-                   jpeg/  ...
-                   jpeg2000/ ...
-                   pdf/   ...
-                   tiff/  ...
-                   utf-8/ ...
-          adump*                           # AIFF dump Bourne shell driver
-          adump.bat*                       # AIFF dump DOS shell driver script
-          gdump*                           # GIF dump Bourne shell driver
-          gdump.bat*                       # GIF dump DOS shell driver script
-          jdump*                           # JPEG dump Bourne shell driver
-          jdump.bat*                       # JPEG dump DOS shell driver script
-          j2dump*                          # JPEG 2000 dump Bourne shell driver
-          j2dump.bat*                      # JPEG 2000 dump DOS shell driver
-          jhove.tmpl*                      # Template for JHOVE Bourne shell driver script
-          jhove_bat.tmpl*                  # Template for JHOVE DOS shell driver script
-          pdump*                           # PDF dump Bourne shell driver
-          pdump.bat*                       # PDF dump DOS shell driver script
-          tdump*                           # TIFF dump Bourne shell driver
-          tdump.bat*                       # TIFF dump DOS shell driver script
-          userhome*                        # user.home Bourne shell driver
-          userhome.bat*                    # user.home DOS shell driver script
-          wdump*                           # WAVE dump Bourne shell driver
-          wdump.bat*                       # WAVE dump DOS shell driver script
-
-INSTALLATION
-
-Edit the configuration file, jhove/conf/jhove.conf, and set the absolute
-pathname of the JHOVE home directory and the temporary directory (in which
-temporary files are created):
-
-    <jhoveHome>jhove-home-directory</jhoveHome>
-    <tempDirectory>temporary-directory</tempDirectory>
-
-The JHOVE home directory is the top-most directory in the distribution TAR
-or ZIP file.  On Unix systems, "/var/tmp" is an appropriate temporary
-directory; on Windows, "C:\Temp".  For example, if the distribution TAR
-file is disaggregated on a Unix system in the directory "/users/stephen/
-projects", then the configuration file should read:
-
-    <jhoveHome>/users/stephen/projects/jhove</jhoveHome>
-    <tempDirectory>/var/tmp</jhoveHome>
-
-In the JHOVE home directory, copy the JHOVE Bourne shell driver script
-template, "jhove.tmpl", to "jhove" (or the equivalent Windows shell 
-script, "jhove_bat.tmpl" to "jhove.bat"), and set the
-JHOVE home directory, Java home directory, and Java interpreter:
-
-    JHOVE_HOME=jhove-home-directory
-    JAVA_HOME=java-home-directory
-    JAVA=java-interpreter
-
-The JAVA_HOME property should provide the absolute pathname of the Java
-runtime or SDK installation; JAVA should provide the absolute pathname of the
-Java interpreter.  For example:
-
-    JHOVE_HOME=/users/stephen/projects/jhove
-    JAVA_HOME=/usr/local/j2re1.4.1_02
-    JAVA=$JAVA_HOME/bin/java
-
-In the DOS shell driver script, jhove.bat, the equivalent three
-variables are:
-
-    SET JHOVE_HOME=jhove-home-directory
-    SET JAVA_HOME=java-home-directory
-    SET JAVA=%JAVA_HOME%\bin\java
-
-For example:
-
-    SET JHOVE_HOME="C:\Program Files\jhove"
-    SET JAVA_HOME="C:\Program Files\java\j2re1.4.1_02"
-    SET JAVA=%JAVA_HOME%\bin\java
-
-The quotation marks are necessary because of the embedded space characters.
-On Windows platforms it may also be necessary to add the Java bin subdirectory
-to the System PATH environment variable:
-
-    PATH=C:\Program Files\java\j2re1.4.1_02\bin;...
-
-(For information on setting a Windows environment variable, consult your local
-documentation or system administrator.)
-
-USAGE
-
-    java Jhove [-c config] [-m module] [-h handler] [-e encoding] [-H handler]
-               [-o output] [-x saxclass] [-t tempdir] [-b bufsize]
-               [-l loglevel] [[-krs] dir-file-or-uri [...]]
-
-where -c config   Configuration file pathname
-      -m module   Module name
-      -h handler  Output handler name (defaults to TEXT)
-      -e encoding Character encoding used by output handler (defaults to UTF-8)
-      -H handler  About handler name
-      -o output   Output file pathname (defaults to standard output)
-      -x saxclass SAX parser class (defaults to J2SE default)
-      -t tempdir  Temporary directory in which to create temporary files
-      -b bufsize  Buffer size for buffered I/O (defaults to J2SE 1.4 default)
-      -l loglevel Logging level
-      -k          Calculate CRC32, MD5, and SHA-1 checksums
-      -r          Display raw data flags, not textual equivalents
-      -s          Format identification based on internal signatures only
-      dir-file-or-uri Directory or file pathname or URI of formated content
-                      stream
-
-All named modules and output handlers must be found on the Java CLASSPATH at
-the time of invocation.  The JHOVE driver script, jhove/jhove, automatically
-sets the CLASSPATH and invokes the Jhove main class:
-
-    jhove [-c config] [-m module] [-h handler] [-e encoding] [-H handler]
-          [-o output] [-x saxclass] [-t tempdir] [-b bufsize] [-l loglevel]
-          [[-krs] dir-file-or-uri [...]]
-
-The following additional programs are available, primarily for testing
-and debugging purposes.  They display a minimally processed, human-readable
-version of the contents of AIFF, GIF, JPEG, JPEG 2000, PDF, TIFF, and WAVE
-files:
-
-    java ADump  aiff-file
-    java GDump  gif-file
-    java JDump  jpeg-file
-    java J2Dump jpeg2000-file
-    java PDump  pdf-file
-    java TDump  tiff-file
-    java WDump  wave-file
-
-For convenience, the following driver scripts are also available:
-
-    adump  aiff-file
-    gdump  gif-file
-    jdump  jpeg-file
-    j2dump jpeg2000-file
-    pdump  pdf-file
-    tdump  tiff-file
-    wdump  wave-file
-
-The JHOVE Swing-based GUI interface can be invoked from a command shell from
-the jhove/bin sub-directory:
-
-    java -jar JhoveView.jar -c <configFile>
-
-where <configFile> is the pathname of the JHOVE configuration file.

jhove/build.xml

@@ -1,78 +0,0 @@
-<project name="Jhove" default="dist" basedir=".">
-  <description>Project build file
-    Jhove - JSTOR/Harvard Object Validation Environment
-    Version 1.0 2004-09-10
-    Copyright 2004 by JSTOR and the President and Fellows of Harvard College
-  </description>
-
-  <!-- ant (or ant dist) Build everything
-       ant debug         Build everything with debug enabled
-       ant clean         Delete backup files
-       ant cleanclass    Delete backup and class files
-       ant cleandist     Delete backup, class, and jar files
-       ant javadoc       Build javadocs
-    -->
-
-  <!-- set global properties for this build -->
-  <property name="bin"     location="bin"/>
-  <property name="classes" location="classes"/>
-  <property name="doc"     location="doc"/>
-
-  <target name="dist" description="Create distribution">
-    <ant dir="${classes}" inheritAll="false">
-      <property name="dbg" value="off"/>
-    </ant>
-  	<chmod file="jhove" perm="ugo+x"/>
-  	<chmod file="${bin}/JhoveView.jar" perm="ugo+x"/>
-  </target>
-
-  <target name="debug" description="Create distribution with debug enabled">
-    <ant dir="${classes}" inheritAll="false">
-      <property name="dbg" value="on"/>
-    </ant>
-  </target>
-
-  <target name="view" description="Create JhoveView application">
-    <ant dir="${classes}" target="view" inheritAll="false">
-      <property name="dbs" value="on"/>
-    </ant>
-  </target>
-
-  <target name="clean" description="Delete backup files">
-    <ant dir="${classes}" target="main-clean" inheritAll="false"/>
-  </target>
-
-  <target name="cleanclass" depends="clean">
-    <ant dir="${classes}" target="main-cleanclass" inheritAll="false"/>
-  </target>
-
-  <target name="cleandist" depends="cleanclass">
-    <delete file="${bin}/jhove.jar"/>
-    <delete file="${bin}/jhove-handler.jar"/>
-    <delete file="${bin}/jhove-module.jar"/>
-    <delete file="${bin}/JhoveApp.jar"/>
-    <delete file="${bin}/JhoveView.jar"/>
-  </target>
-
-  <target name="javadoc">
-    <javadoc sourcepath="${classes}" destdir="${doc}"
-             windowtitle="JHOVE Documentation"
-             Overview="${classes}/overview.html">
-      <package name="edu.harvard.hul.ois.jhove"/>
-      <package name="edu.harvard.hul.ois.jhove.handler"/>
-      <package name="edu.harvard.hul.ois.jhove.handler.audit"/>
-      <package name="edu.harvard.hul.ois.jhove.module"/>
-      <package name="edu.harvard.hul.ois.jhove.module.aiff"/>
-      <package name="edu.harvard.hul.ois.jhove.module.gif"/>
-      <package name="edu.harvard.hul.ois.jhove.module.html"/>
-      <package name="edu.harvard.hul.ois.jhove.module.iff"/>
-      <package name="edu.harvard.hul.ois.jhove.module.jpeg"/>
-      <package name="edu.harvard.hul.ois.jhove.module.jpeg2000"/>
-      <package name="edu.harvard.hul.ois.jhove.module.pdf"/>
-      <package name="edu.harvard.hul.ois.jhove.module.tiff"/>
-      <package name="edu.harvard.hul.ois.jhove.module.wave"/>
-      <package name="edu.harvard.hul.ois.jhove.module.xml"/>
-      <package name="edu.harvard.hul.ois.jhove.viewer"/>
-    </javadoc>
-  </target>
-</project>

jhove/classes/ADump.java

@@ -1,235 +0,0 @@
-/**********************************************************************
- * JDump - JSTOR/Harvard Object Validation Environment
- * Copyright 2004-2005 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-import edu.harvard.hul.ois.jhove.module.aiff.*;
-import java.io.*;
-
-/**
- * Dump contents of AIFF file in human-readable format.
- * @author Gary McGath
- */
-public class ADump extends Dump {
-
-    /* Fixed value for first 4 bytes */
-    private static final int[] sigByte =
-       { 0X46, 0X4F, 0X52, 0X4D };
-    private static final boolean ENDIAN = true;     /* bigEndian */
-
-    /******************************************************************
-     * MAIN ENTRY POINT.
-     ******************************************************************/
-
-    /**
-     * Main entry point.
-     * @param args Command line arguments
-     */
-    public static void main (String [] args)
-    {
-        if (args.length < 1) {
-            System.err.println ("usage: java ADump file");
-            System.exit (-1);
-        }
-        try {
-            FileInputStream file = new FileInputStream (args[0]);
-            BufferedInputStream buffer = new BufferedInputStream (file);
-            DataInputStream stream = new DataInputStream (buffer);
-            ADump dump = new ADump ();   // Just to access contained classes
-            long os = 0;
-            for (int i=0; i<4; i++) {
-                int ch;
-                ch = stream.readUnsignedByte();
-                if (ch != sigByte[i]) {
-                    System.out.println ("No AIFF FORM header");
-                    System.exit (-2);
-                }
-            }
-            os += 4;
-            long ckSize = ModuleBase.readUnsignedInt (stream, ENDIAN);
-            
-            // Read the file type
-            StringBuffer formType = new StringBuffer (4);
-            for (int i=0; i<4; i++) {
-                int ch = ModuleBase.readUnsignedByte(stream);
-                formType.append((char) ch);
-            }
-	    System.out.println ("00000000: FORM " + ckSize + ": " + formType);
-
-	    boolean aiff_c = false;
-	    if (formType.toString ().equals ("AIFC")) {
-		aiff_c = true;
-	    }
-
-            StringBuffer sbuf = new StringBuffer ();
-            boolean endOfFile = false;
-            while (!endOfFile) {
-                // Read chunks
-                try {
-                    sbuf.setLength(0);
-                    // Read chunk name.
-                    for (int i=0; i<4; i++) {
-                        int ch = ModuleBase.readUnsignedByte(stream);
-                        sbuf.append((char) ch);
-                    }
-                    String ckID = sbuf.toString ();
-                    // Read size (excluding chunk name and size fields)
-		    ckSize = ModuleBase.readUnsignedInt (stream, ENDIAN);
-                    System.out.print (leading (os, 8) + os + ": " + ckID +
-				      " " + ckSize);
-		    long alreadyRead = 0;
-		    if (ckID.equals ("AESD")) {
-			int [] aes = new int[24];
-			for (int i=0; i<24; i++) {
-			    aes[i] = ModuleBase.readUnsignedByte (stream);
-			    
-			}
-			System.out.print (": " + aes[0]);
-			for (int i=1; i<24; i++) {
-			    System.out.print ("," + aes[i]);
-			}
-			alreadyRead = 24;
-		    }
-		    else if (ckID.equals ("ANNO") ||
-			     ckID.equals ("AUTH") ||
-			     ckID.equals ("(c) ") ||
-			     ckID.equals ("NAME")) {
-			sbuf.setLength (0);
-			for (int i=0; i<ckSize; i++) {
-			    int ch = ModuleBase.readUnsignedByte (stream);
-			    sbuf.append ((char) ch);
-			}
-			System.out.print (": \"" + sbuf.toString () + "\"");
-			alreadyRead = ckSize;
-		    }
-		    else if (ckID.equals ("APPL")) {
-			sbuf.setLength (0);
-			for (int i=0; i<4; i++) {
-			    int ch = ModuleBase.readUnsignedByte (stream);
-			    sbuf.append ((char) ch);
-			}
-			System.out.print (": " + sbuf.toString ());
-			alreadyRead = 4;
-		    }
-		    else if (ckID.equals ("COMM")) {
-			int numChannels = ModuleBase.readSignedShort (stream,
-								      ENDIAN);
-			long numSampleFrames =
-			    ModuleBase.readUnsignedInt (stream, ENDIAN);
-			int sampleSize = ModuleBase.readSignedShort (stream,
-								     ENDIAN);
-			byte [] buf = new byte[10];
-			for (int i=0; i<10; i++) {
-			    buf[i] = (byte) ModuleBase.readSignedByte (stream);
-			}
-			ExtDouble xd = new ExtDouble (buf);
-			double sampleRate = xd.toDouble ();
-
-			System.out.print (": " + numChannels + " " +
-					  numSampleFrames + " " + sampleSize +
-					  " " + sampleRate);
-			alreadyRead = 18;
-
-			if (aiff_c) {
-			    sbuf.setLength (0);
-			    for (int i=0; i<4; i++) {
-				int ch = ModuleBase.readUnsignedByte (stream,
-								      null);
-				sbuf.append ((char) ch);
-			    }
-			    System.out.print (" " + sbuf.toString ());
-
-			    int count = ModuleBase.readUnsignedByte (stream,
-								     null);
-			    alreadyRead = 23;
-			    sbuf.setLength (0);
-			    for (int i=0; i<count; i++) {
-				int ch = ModuleBase.readUnsignedByte (stream,
-								      null);
-				sbuf.append ((char) ch);
-
-				alreadyRead++;
-			    }
-			    System.out.print (" \"" + sbuf.toString () + "\"");
-			}
-
-		    }
-		    else if (ckID.equals ("COMT")) {
-			int numComments = ModuleBase.readUnsignedShort (stream,
-									ENDIAN,
-									null);
-			System.out.print (": " + numComments);
-			alreadyRead = 2;
-		    }
-		    else if (ckID.equals ("FVER")) {
-			long timestamp = ModuleBase.readUnsignedInt (stream,
-								     ENDIAN,
-								     null);
-			System.out.print (": " + timestamp);
-			alreadyRead = 4;
-		    }
-		    else if (ckID.equals ("INST")) {
-			int baseNote = ModuleBase.readSignedByte (stream);
-			int detune = ModuleBase.readSignedByte (stream);
-			int lowNote = ModuleBase.readSignedByte (stream);
-			int highNote = ModuleBase.readSignedByte (stream);
-			int lowVelocity = ModuleBase.readSignedByte (stream);
-			int highVelocity = ModuleBase.readSignedByte (stream);
-			int gain = ModuleBase.readSignedShort (stream, ENDIAN);
-
-			System.out.print (": " + baseNote + " " + detune +
-					  " " + lowNote + "," + highNote +
-					  " " + lowVelocity + "," +
-					  highVelocity + " " + gain);
-			alreadyRead = 8;
-		    }
-		    else if (ckID.equals ("MARK")) {
-			int numMarkers = ModuleBase.readUnsignedShort (stream,
-								       ENDIAN);
-			System.out.print (": " + numMarkers);
-			alreadyRead = 2;
-		    }
-		    else if (ckID.equals ("SSND")) {
-			long offset = ModuleBase.readUnsignedInt (stream,
-								  ENDIAN);
-			long blockSize = ModuleBase.readUnsignedInt (stream,
-								     ENDIAN);
-			System.out.print (": " + offset + " " + blockSize);
-			alreadyRead = 8;
-		    }
-		    System.out.println ();
-
-                    // Actual number of bytes to skip must be even.
-                    long actSize = ckSize;
-                    if ((actSize & 1) != 0) {
-                        actSize++;
-                    }
-		    actSize -= alreadyRead;
-                    stream.skipBytes ((int) actSize);
-                    os += ckSize + 8;
-                }
-                catch (EOFException e) {
-                    endOfFile = true;
-                }
-            }
-        }
-        catch (Exception e) {
-        }
-    }
-}

jhove/classes/GDump.java

@@ -1,264 +0,0 @@
-/**********************************************************************
- * GDump - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-import java.io.*;
-//import java.util.*;
-
-/**
- * Dump contents of GIF file in human-readable format.
- */
-public class GDump
-    extends Dump
-{
-    /******************************************************************
-     * MAIN ENTRY POINT.
-     ******************************************************************/
-
-    /**
-     * Main entry point.
-     * @param args Command line arguments
-     */
-    public static void main (String [] args)
-    {
-	if (args.length < 1) {
-	    System.err.println ("usage: java GDump file");
-	    System.exit (-1);
-	}
-
-	try {
-	    FileInputStream file = new FileInputStream (args[0]);
-	    BufferedInputStream buffer = new BufferedInputStream (file);
-	    DataInputStream stream = new DataInputStream (buffer);
-	    boolean bigEndian = false;
-
-	    String signature = readChars (stream, 3);
-	    String version   = readChars (stream, 3);
-	    System.out.println ("00000000: \"" + signature + version + "\"");
-
-	    int width  = ModuleBase.readUnsignedShort(stream, bigEndian, null);
-	    int height = ModuleBase.readUnsignedShort(stream, bigEndian, null);
-	    int packedFields    = stream.readUnsignedByte ();
-	    int backgroundColor = stream.readUnsignedByte ();
-	    int aspectRatio     = stream.readUnsignedByte ();
-	    System.out.println ("00000006: LogicalScreenDescriptor: " +
-				width + "x" + height + " 0x" +
-				leading (packedFields, 2) +
-				Integer.toHexString (packedFields) + " " +
-				backgroundColor + " " + aspectRatio);
-	    long os = 13;
-
-	    boolean globalColorTable     = (packedFields & 0x80) != 0;
-	    int     globalColorTableSize =  packedFields & 0x07;
-
-	    if (globalColorTable) {
-		System.out.println (leading (os, 8) + os +
-				    ": GlobalColorTable:");
-		os = colorTable (stream, os, globalColorTableSize);
-	    }
-
-	    for (int op = 0; (op = stream.readUnsignedByte ()) != -1;) {
-		if (op == 0x00) {
-		    System.out.println (leading (os, 8) + os + 
-					": BlockTerminator");
-		    os++;
-		}
-		else if (op == 0x2c) {
-		    int imageLeft   = ModuleBase.readUnsignedShort (stream,
-								    bigEndian,
-								    null);
-		    int imageTop    = ModuleBase.readUnsignedShort (stream,
-								    bigEndian,
-								    null);
-		    int imageWidth  = ModuleBase.readUnsignedShort (stream,
-								    bigEndian,
-								    null);
-		    int imageHeight = ModuleBase.readUnsignedShort (stream,
-								    bigEndian,
-								    null);
-		    packedFields = stream.readUnsignedByte ();
-		    System.out.println (leading (os, 8) + os +
-					": ImageDescriptor: " + imageLeft +
-					"," + imageTop + " " + imageWidth +
-					"x" + imageHeight + " 0x" +
-					leading (packedFields, 2) +
-					Integer.toHexString (packedFields));
-		    os += 10;
-
-		    boolean localColorTable     = (packedFields & 0x80) != 0;
-		    int     localColorTableSize =  packedFields & 0x07;
-
-		    if (localColorTable) {
-			System.out.println (leading (os, 8) + os +
-					    ": LocalColorTable:");
-			os = colorTable (stream, os, localColorTableSize);
-		    }
-
-		    int size = stream.readUnsignedByte ();
-		    System.out.println (leading (os, 8) + os +
-					": ImageData: " + size);
-		    os = subBlocks (stream, ++os);
-		}
-		else if (op == 0x21) {
-		    int label = stream.readUnsignedByte ();
-
-		    if (label == 0x01) {
-			int blockSize = stream.readUnsignedByte ();
-			int gridLeft  = ModuleBase.readUnsignedShort(stream,
-								     bigEndian,
-								     null);
-			int gridTop   = ModuleBase.readUnsignedShort(stream,
-								     bigEndian,
-								     null);
-			int gridWidth = ModuleBase.readUnsignedShort(stream,
-								     bigEndian,
-								     null);
-			int gridHeight= ModuleBase.readUnsignedShort(stream,
-								     bigEndian,
-								     null);
-			int cellWidth  = stream.readUnsignedByte ();
-			int cellHeight = stream.readUnsignedByte ();
-			int foreground = stream.readUnsignedByte ();
-			int background = stream.readUnsignedByte ();
-			System.out.println (leading (os, 8) + os + 
-					    ": PlainTextExtension: " +
-					    blockSize + " " + gridLeft + "," +
-					    gridTop + " " + gridWidth + "x" +
-					    gridHeight + " " + cellWidth +
-					    "x" + cellHeight + " " +
-					    foreground + "," + background);
-			os += 15;
-			os = subBlocks (stream, os);
-		    }
-		    else if (label == 0xf9) {
-			int blockSize = stream.readUnsignedByte ();
-			packedFields  = stream.readUnsignedByte ();
-			int delayTime = ModuleBase.readUnsignedShort(stream,
-								     bigEndian,
-								     null);
-			int colorIndex= stream.readUnsignedByte ();
-			System.out.println (leading (os, 8) + os +
-					    ": GraphicControlExtension: " +
-					    blockSize + " 0x" +
-					    leading (packedFields, 2) +
-					    packedFields + " " + delayTime +
-					    " " + colorIndex);
-			os += 7;
-		    }
-		    else if (label == 0xfe) {
-			System.out.println (leading (os, 8) + os + 
-					    ": CommentExtension: \"" +
-					    "\"");
-			os += 2;
-			os = subBlocks (stream, os);
-		    }
-		    else if (label == 0xff) {
-			int blockSize = stream.readUnsignedByte ();
-			String appId  = readChars (stream, 8);
-			int [] authCode = new int [3];
-			authCode[0]   = stream.readUnsignedByte ();
-			authCode[1]   = stream.readUnsignedByte ();
-			authCode[2]   = stream.readUnsignedByte ();
-			System.out.println (leading (os, 8) + os + 
-					    ": ApplicationExtension: " +
-					    blockSize + " \"" + appId +
-					    "\" " + authCode[0] + "," +
-					    authCode[1] + "," + authCode[2]);
-			os += 14;
-			os = subBlocks (stream, os);
-		    }
-		    else {
-			String hex = Integer.toHexString (label);
-			System.out.println (leading (os-1, 8) + (os-1) +
-					    ": Unknown extension block: 0x" +
-					    leading (hex, 2) + hex);
-			os += 2;
-		    }
-		}
-		else if (op == 0x3b) {
-		    System.out.println (leading (os, 8) + os +
-					": Trailer: 0x3b");
-		    os++;
-		    break;
-		}
-		else {
-		    String hex = Integer.toHexString (op);
-		    System.out.println (leading (os, 8) + os +
-					": Unknown block: 0x" +
-					leading (hex, 2) +  hex);
-		    os++;
-		}
-	    }
-	    stream.close ();
-	}
-	catch (Exception e) {
-	    e.printStackTrace (System.err);
-	    System.exit (-2);
-	}
-    }
-
-    /**
-     * Read and display a color table.
-     * @param stream Data input stream
-     * @param os     Current byte offset
-     * @param size   Color table size
-     * @return Updated byte offset
-     */
-    private static long colorTable (DataInputStream stream, long os, int size)
-	throws IOException
-    {
-	int n = 2<<size;
-	for (int i=0; i<n; i++) {
-	    long r = stream.readUnsignedByte ();
-	    long g = stream.readUnsignedByte ();
-	    long b = stream.readUnsignedByte ();
-	    System.out.println (leading (os, 8) + os + ": " +
-				leading (i, 3, ' ') + i + ": " +
-				leading (r, 3, ' ') + r + "," +
-				leading (g, 3, ' ') + g + "," +
-				leading (b, 3, ' ') + b);
-	    os += 3;
-	}
-	return os;
-    }
-
-    /**
-     * Read and display a sequence of sub-blocks.
-     * @param stream Data input stream
-     * @param os     Current byte offset
-     * @return Updated byte offset
-     */
-    private static long subBlocks (DataInputStream stream, long os)
-	throws IOException
-    {
-	int size;
-
-	while ((size = stream.readUnsignedByte ()) != 0) {
-	    System.out.println (leading (os, 8) + os + ": SubBlock: " + size);
-	    os += 1;
-	    for (int i=0; i<size; i++) {
-		stream.readUnsignedByte ();
-		os += 1;
-	    }
-	}
-	System.out.println (leading (os, 8) + os +  ": BlockTerminator");
-	return os + 1;
-    }
-}

jhove/classes/J2Dump.java

@@ -1,216 +0,0 @@
-/**********************************************************************
- * JDump - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-import java.io.*;
-import java.util.*;
-
-/**
- * Dump contents of JPEG2000 file in human-readable format.
- */
-public class J2Dump extends Dump {
-
-    /* Fixed value for first 12 bytes */
-    private static final int[] sigByte =
-        {
-            0X00,
-            0X00,
-            0X00,
-            0X0C,
-            0X6A,
-            0X50,
-            0X20,
-            0X20,
-            0X0D,
-            0X0A,
-            0X87,
-            0X0A };
-
-    private static final boolean ENDIAN = true;     /* bigEndian */
-    
-    /******************************************************************
-     * MAIN ENTRY POINT.
-     ******************************************************************/
-
-    /**
-     * Main entry point.
-     * @param args Command line arguments
-     */
-    public static void main (String [] args)
-    {
-        if (args.length < 1) {
-            System.err.println ("usage: java J2Dump file");
-            System.exit (-1);
-        }
-        try {
-            FileInputStream file = new FileInputStream (args[0]);
-            BufferedInputStream buffer = new BufferedInputStream (file);
-            DataInputStream stream = new DataInputStream (buffer);
-            J2Dump dump = new J2Dump ();   // Just to access contained classes
-            long os = 0;
-            boolean bigEndian = true;
-            int i;
-            for (i = 0; i < 12; i++) {
-                int ch;
-                ch = stream.readUnsignedByte();
-                if (ch != sigByte[i]) {
-                    System.out.println ("No JPEG 2000 header");
-                    System.exit (-2);
-                }
-            }
-            os += 12;
-            
-            boolean endOfFile = false;
-            Stack boxStack = new Stack ();
-            while (!endOfFile) {
-                //If there are boxes on the stack, see if there's space
-                //left in the top one.
-                Box boxtop;
-                for (;;) {
-                    boxtop = null;
-                    if (boxStack.isEmpty ()) {
-                        break;
-                    }
-                    boxtop = (Box) boxStack.peek ();
-                    if (boxtop.bytesLeft > 0) {
-                        break;
-                    }
-                    else {
-                        boxStack.pop ();
-                    }
-                }
-                
-                // Read the header of a JP2 box
-                Box box = dump.new Box (stream);
-                try {
-                    box.read ();
-                }
-                catch (EOFException e) {
-                    endOfFile = true;
-                    break;
-                }
-                os += box.length - box.bytesLeft;
-                
-                // If it's contained in a superbox, subtract
-                // this box from its remaining length
-                if (boxtop != null) {
-                    boxtop.bytesLeft -= box.length;
-                }
-                System.out.println (leading (os, 8) + os + ": " + 
-                    stackPrefix (boxStack) + box.type + " " + box.length);
-                if (box.isSuperbox ()) {
-                    boxStack.push (box);
-                }
-                else {
-                    os += box.bytesLeft;
-                    stream.skipBytes((int) box.bytesLeft);
-                }
-                
-                // A "length" of 0 means the box occupies the rest of the file.
-                if (box.length == 0) {
-                    endOfFile = true;
-                }
-            }
-        }
-        catch (Exception e) {
-            e.printStackTrace (System.err);
-            System.exit (-2);
-        }
-    }
-
-
-    /* Constructs a qualifying prefix to indicate nested boxes. */
-    private static String stackPrefix (Stack boxStack)
-    {
-        StringBuffer retval = new StringBuffer ();
-        // In defiance of gravity, we rummage through the stack
-        // of boxes starting at the bottom.
-        for (int i = 0; i < boxStack.size(); i++) {
-            Box box = (Box) boxStack.elementAt (i);
-            // Remove trailing spaces from types for better readability
-            retval.append (box.type.trim() + "/");
-        }
-        return retval.toString ();
-    }
-
-
-
-    /** Local class for defining JPEG2000 boxes. */
-    class Box {
-        public String type;
-        public long length;
-        public long bytesLeft;
-        public boolean hasBoxes;
-        DataInputStream dstream;
-        
-        public Box (DataInputStream stream)
-        {
-            this.dstream = stream;
-        }
-        
-        
-        /** Reads a box header and sets up for reading contents. */
-        public void read () throws IOException
-        {
-            length = ModuleBase.readUnsignedInt (dstream, ENDIAN, null);
-            long headerLength = 8;
-            type = read4Chars ();
-            // If the length field is 1, there is an 8-byte extended
-            // length field.
-            if (length == 1) {
-                length = ModuleBase.readSignedLong(dstream, true, null);
-                headerLength = 16;
-            }
-            bytesLeft = length - headerLength;
-        }
-
-
-        /* Reads a 4-character name */
-        private String read4Chars() throws IOException {
-            StringBuffer sbuf = new StringBuffer(4);
-            for (int i = 0; i < 4; i++) {
-                int ch = ModuleBase.readUnsignedByte(dstream, null);
-                sbuf.append((char) ch);
-            }
-            return sbuf.toString();
-        }
-
-        /** Returns true if this box contains other boxes.
-         *  At present, we don't deal with the insides of boxes
-         *  that contain both data and boxes (e.g., cref). */
-        public boolean isSuperbox ()
-        {
-            // If it's a known superbox type, we return true.
-            // If we've left any out, that will merely make us
-            // lose the subboxes of that type.
-            String [] supertypes = { "asoc", "cgrp", "comp", "drep",
-                "ftbl", "jp2h", "jpch",
-                "jplh", "res ", "uuid" };
-            for (int i = 0; i < supertypes.length; i++) {
-                if (supertypes[i].equals (type)) {
-                    return true;
-                }
-            }
-            return false;
-        }
-    }
-
-
-}

jhove/classes/JDump.java

@@ -1,404 +0,0 @@
-/**********************************************************************
- * JDump - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-import java.io.*;
-//import java.util.*;
-
-/**
- * Dump contents of JPEG file in human-readable format.
- */
-public class JDump
-    extends Dump
-{
-    /******************************************************************
-     * MAIN ENTRY POINT.
-     ******************************************************************/
-
-    /**
-     * Main entry point.
-     * @param args Command line arguments
-     */
-    public static void main (String [] args)
-    {
-	if (args.length < 1) {
-	    System.err.println ("usage: java JDump file");
-	    System.exit (-1);
-	}
-
-	try {
-	    FileInputStream file = new FileInputStream (args[0]);
-	    BufferedInputStream buffer = new BufferedInputStream (file);
-	    DataInputStream stream = new DataInputStream (buffer);
-	    boolean bigEndian = true;
-
-	    long os = 0;
-
-	    boolean endOfImage = false;
-	    boolean readingECS = false;
-	    boolean haveCode   = false;;
-	    int nECS = 0;
-	    int code = 0;
-	    while (!endOfImage) {
-		if (!readingECS) {
-		    if (!haveCode) {
-			code = stream.readUnsignedByte ();
-			for (int i=0;
-			     (code = stream.readUnsignedByte ()) == 0xff;
-			     i++) {
-			    System.out.println (leading (os, 8) + os +
-						": fill 0xff");
-			    os++;
-			}
-		    }
-		}
-		else {
-		    boolean ff = false;
-		    int length = 0;
-		    while (true) {
-			code = stream.readUnsignedByte ();
-			length++;
-			if (code == 0xff) {
-			    ff = true;
-			}
-			else if (ff) {
-			    if (code != 0x00) {
-				length -= 2;
-				break;
-			    }
-			    else {
-				ff = false;
-			    }
-			}
-		    }
-		    System.out.println (leading (os, 8) + os + ": ECS" +
-					nECS + " " + length + " ...");
-		    os += length;
-		    nECS++;
-		    readingECS = false;
-		    haveCode   = true;
-		    continue;
-		}
-
-		if (code == 0x01) {
-		    System.out.println (leading (os, 8) + os + ": TEM");
-		}
-		else if ((code >= 0xc0 && code <= 0xc3) ||
-			 (code >= 0xc5 && code <= 0xc7) ||
-			 (code >= 0xc9 && code <= 0xcb) ||
-			 (code >= 0xcd && code <= 0xcf)) {
-		    int n = code - 0xc0;
-/****************** int length = markerSegment (stream, bigEndian); */
-		    int length = ModuleBase.readUnsignedShort (stream,
-							       bigEndian,
-							       null);
-		    int P  = stream.readUnsignedByte ();
-		    int Y  = ModuleBase.readUnsignedShort (stream, bigEndian,
-							  null);
-		    int X  = ModuleBase.readUnsignedShort (stream, bigEndian,
-							   null);
-		    int Nf = stream.readUnsignedByte ();
-		    int [] Ci  = new int [Nf];
-		    int [] Hi  = new int [Nf];
-		    int [] Vi  = new int [Nf];
-		    int [] Tqi = new int [Nf];
-		    for (int i=0; i<Nf; i++) {
-			Ci[i]  = stream.readUnsignedByte ();
-			Hi[i]  = stream.readUnsignedByte ();
-			Tqi[i] = stream.readUnsignedByte ();
-		    }
-		    System.out.print (leading (os, 8) + os + ": SOF" + n +
-				      " " + length + ": " + P + " " + X +
-				      "x" + Y + " " + Nf + ":");
-		    for (int i=0; i<Nf; i++) {
-			System.out.print (" " + Ci[i] + "," + Hi[i] + "," +
-					  Tqi[i]);
-		    }
-		    System.out.println ();
-		    os += length;
-		}
-		else if (code == 0xc4) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DHT" + " " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xc8) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": JPG" + " " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xcc) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DAC" + " " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code >= 0xd0 && code <= 0xd7) {
-		    int m = code - 0xd0;
-		    System.out.println (leading (os, 8) + os + ": RST" + m);
-
-		    readingECS = true;
-		}
-		else if (code == 0xd8) {
-		    System.out.println (leading (os, 8) + os + ": SOI");
-		}
-		else if (code == 0xd9) {
-		    System.out.println (leading (os, 8) + os + ": EOI");
-		    endOfImage = true;
-		    break;
-		}
-		else if (code == 0xda) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": SOS" + " " +
-					length + " ...");
-		    os += length;
-
-		    readingECS = true;
-		}
-		else if (code == 0xdb) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DQT" + " " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xdc) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DNL" + " " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xdd) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DRI" + " " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xde) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DHP" + " " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xdf) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": EXP" + " " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xe0) {
-		    int length = ModuleBase.readUnsignedShort (stream,
-							       bigEndian,
-							       null);
-		    String id  = readChars (stream, 5);
-		    if (id.equals ("JFIF\0")) {
-			int major  = stream.readUnsignedByte ();
-			int minor  = stream.readUnsignedByte ();
-			int units  = stream.readUnsignedByte ();
-			int xDensity = ModuleBase.readUnsignedShort (stream,
-								     bigEndian,
-								     null);
-			int yDensity = ModuleBase.readUnsignedShort (stream,
-								     bigEndian,
-								     null);
-			int xThumbnail = stream.readUnsignedByte ();
-			int yThumbnail = stream.readUnsignedByte ();
-			System.out.print (leading (os, 8) + os + ": APP0 " +
-					  "\"" + id + "\" " + major + "." +
-					  minor + " " + units + " " +
-					  xDensity + "x" + yDensity + " "
-					  + xThumbnail + "x" + yThumbnail);
-			int n = length - 16;
-			if (n > 0) {
-			    for (int i=0; i<n; i++) {
-				stream.readUnsignedByte ();
-			    }
-			    System.out.print (" " + n + " ...");
-			}
-			System.out.println ();
-		    }
-		    else if (id.equals ("JFXX\0")) {
-			int ext = stream.readUnsignedByte ();
-			String hex = Integer.toHexString (ext);
-			System.out.print (leading (os, 8) + os + ": APP0 " +
-					  "0x" + leading (hex, 2) + hex);
-			int n = length-3;
-			if (n > 0) {
-			    for (int i=0; i<n; i++) {
-				stream.readUnsignedByte ();
-			    }
-			    System.out.print (" " + n + " ...");
-			}
-			System.out.println ();
-		    }
-		    else {
-			System.out.println (leading (os, 8) + os + ": APP0 " +
-					    length + " ...");
-			for (int i=2; i<length; i++) {
-			    stream.readUnsignedByte ();
-			}
-		    }
-		    os += length;
-		}
-		else if (code >= 0xe1 && code <= 0xef) {
-		    int n = code - 0xe0;
-		    /*
-    		    int length = markerSegment (stream, bigEndian);
-		    */
-		    int length = ModuleBase.readUnsignedShort (stream,
-							       bigEndian,
-							       null);
-		    if ((n == 1 || n == 2) && length >= 8) {
-			String id = readChars (stream, 4);
-			int NULL    = stream.readUnsignedByte ();
-			int padding = stream.readUnsignedByte ();
-			if (id.equals ("Exif") || id.equals ("FPXR")) {
-			    System.out.println (leading (os, 8) + os +
-						": APP" + n + " \"" + id +
-						"\" " + NULL + " " + padding +
-						" " + (length-8) + ": ...");
-			}
-			else {
-			    System.out.println (leading (os, 8) + os +
-						": APP" + n + " " + length +
-						" ...");
-			}
-			for (int i=8; i<length; i++) {
-			    stream.readUnsignedByte ();
-			}
-		    }
-		    else {
-			System.out.println (leading (os, 8) + os + ": APP" +
-					    n +	" " + length + " ...");
-			for (int i=2; i<length; i++) {
-			    stream.readUnsignedByte ();
-			}
-		    }
-		    os += length;
-		}
-		else if (code == 0xf0) {
-		    int length = ModuleBase.readUnsignedShort (stream,
-							       bigEndian,
-							       null);
-		    int v   = stream.readUnsignedByte ();
-		    int rev = stream.readUnsignedByte ();
-		    System.out.print (leading (os, 8) + os + ": VER " + 
-					v + "." + rev);
-		    int n = length - 4;
-		    if (n > 0) {
-			int [] cap = new int [n];
-			for (int i=0; i<n; i++) {
-			    cap[i] = stream.readUnsignedByte ();
-			    System.out.print (((i==0) ? " " : ",") + cap[i]);
-			}
-		    }
-		    System.out.println ();
-		    os += length;
-		}
-		else if (code == 0xf1) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DTI " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xf2) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DTT " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xf3) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": SRF " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xf4) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": SRS " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xf5) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DCR " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code == 0xf6) {
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": DQS " +
-					length + " ...");
-		    os += length;
-		}
-		else if (code >= 0xf7 && code <= 0xfd) {
-		    int n = code - 0xf0;
-		    int length = markerSegment (stream, bigEndian);
-		    System.out.println (leading (os, 8) + os + ": JPG" + n +
-					" " + length + " ...");
-		    os += length;
-		}
-		else if (code == 0xfe) {
-		    int length = ModuleBase.readUnsignedShort (stream,
-							       bigEndian,
-							       null);
-		    String comment = readChars (stream, length-2);
-		    System.out.println (leading (os, 8) + os + ": COM \"" +
-					comment + "\"");
-		    os += length;
-		}
-		else {
-		    int length = markerSegment (stream, bigEndian);
-		    String hex = Integer.toHexString (code);
-		    System.out.println (leading (os, 8) + os + ": RES (0x" +
-					leading (hex, 2) + hex + ") " +
-					length + " ...");
-		}
-		os += 2;
-	    }
-
-	    stream.close ();
-	}
-	catch (Exception e) {
-	    e.printStackTrace (System.err);
-	    System.exit (-2);
-	}
-    }
-
-    /**
-     * Read marker segment data
-     * @param stream    Data input stream
-     * @param bigEndian True if big-endian
-     * @return Length of marker segment
-     */
-    private static int markerSegment (DataInputStream stream,
-				      boolean bigEndian)
-	throws IOException
-    {
-	int length = ModuleBase.readUnsignedShort (stream,
-						   bigEndian,
-						   null);
-	for (int i=2; i<length; i++) {
-	    stream.readUnsignedByte ();
-	}
-	return length;
-    }
-}

jhove/classes/Jhove.java

@@ -1,313 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004-2007 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-//import java.io.*;
-import java.util.*;
-
-public class Jhove
-{
-    /******************************************************************
-     * PRIVATE CLASS FIELDS.
-     ******************************************************************/
-
-    /** Application name. */
-    private static final String NAME = "Jhove";
-
-    /** Application build date, YYYY, MM, DD. */
-    private static int [] DATE;
-
-    /** Application release number. */
-    private static String RELEASE;
-
-    /** Application invocation syntax. */
-    private static final String USAGE = "java " + NAME + " [-c config] " +
-        "[-m module] [-h handler] [-e encoding] [-H handler] [-o output] " +
-	"[-x saxclass] [-t tempdir] [-b bufsize] [-l loglevel] [[-krs] " +
-	"dir-file-or-uri [...]]";
-
-    /** Copyright information. */
-    private static final String RIGHTS =
-	"Derived from software Copyright 2004-2011 " +
-    "by the President and Fellows of Harvard College. " +
-    "Version 1.7 and higher independently released. " +
-	"Released under the GNU Lesser General Public License.";
-
-    /******************************************************************
-     * MAIN ENTRY POINT.
-     ******************************************************************/
-
-    public static void main (String [] args)
-    {
-        RELEASE = JhoveBase._release;      // possibly safer than final static init
-        DATE = JhoveBase.DATE;
-        /* Make sure we have a satisfactory version of Java. */
-        String version = System.getProperty ("java.vm.version");
-        if (version.compareTo ("1.5.0") < 0) {
-            //System.err.println (NAME + ": Java 1.4 or higher is required");
-            System.out.println ("Java 1.5 or higher is required");
-            System.exit (-1);
-        }
-
-        try {
-    
-    	    /**********************************************************
-    	     * Initialize the application state object.
-    	     **********************************************************/
-    
-    	    App app = new App (NAME, RELEASE, DATE, USAGE, RIGHTS);
-    
-    	    /**********************************************************
-    	     * Retrieve the configuration file.
-    	     **********************************************************/
-    
-    	    String configFile = JhoveBase.getConfigFileFromProperties ();
-    	    String saxClass   = JhoveBase.getSaxClassFromProperties ();
-    
-    	    /* Pre-parse the command line for -c and -x config options. 
-    	     * With Windows, we have to deal with quote marks on our own. With Unix,
-    	     * the shell takes care of quotes for us. */
-    	    boolean quoted = false;
-    	    for (int i=0; i<args.length; i++) {
-    		if (quoted) {
-    		    int len = args[i].length ();
-                if (args[i].charAt (len-1) == '"') {
-                    quoted = false;
-                }
-    		}
-    		else {
-    		    if (args[i].equals ("-c")) {
-                    if (i < args.length-1) {
-                        configFile = args[++i];
-                    }
-                }
-    		    else if (args[i].equals ("-x")) {
-                    if (i <args.length-1) {
-                        saxClass = args[++i];
-                    }
-                }
-    		    else if (args[i].charAt (0) == '"') {
-                    quoted = true;
-                }
-    		}
-        }
-    
-    	    /**********************************************************
-    	     * Initialize the JHOVE engine.
-    	     **********************************************************/
-    
-    	    String encoding     = null;
-    	    String tempDir      = null;
-    	    int    bufferSize   = -1;
-    
-            String moduleName   = null;
-            String handlerName  = null;
-            String aboutHandler = null;
-            String logLevel     = "SEVERE";
-            String outputFile   = null;
-            boolean checksum    = false;
-            boolean showRaw     = false;
-            boolean signature   = false;
-            List<String> list   = new ArrayList<String> ();
-    
-    	 
-                /**********************************************************
-                 * Parse command line arguments:
-                 *  -m module    Module name
-                 *  -h handler   Output handler
-    	     *  -e encoding  Output encoding
-                 *  -H handler   About handler
-                 *  -o output    Output file pathname
-                 *  -t tempdir   Directory for temp files
-                 *  -b bufsize   Buffer size for buffered I/O
-                 *  -k           Calculate checksums
-                 *  -r           Display raw numeric flags 
-                 *  -s           Check internal signatures only
-                 *  dirFileOrUri Directories, file pathnames, or URIs
-    	     *
-    	     * The following arguments were defined in previous
-    	     * versions, but are now obsolete
-                 *  -p param     OBSOLETE
-                 *  -P param     OBSOLETE
-    	     **********************************************************/
-    
-    	    quoted = false;
-    	    StringBuffer filename = null;
-    
-            for (int i=0; i<args.length; i++) {
-                if (quoted) {
-                    int len = args[i].length ();
-                    if (args[i].charAt (len-1) == '"') {
-                        filename.append (" " + args[i].substring (0, len-1));
-                        list.add (filename.toString ());
-                        quoted = false;
-                    }
-                    else {
-                        filename.append (" " + args[i]);
-                    }
-                }
-                else {
-        		    if (args[i].equals ("-c")) {
-                        i++;
-        		    }
-        		    else if (args[i].equals ("-m")) {
-                        if (i < args.length-1) {
-                            moduleName = args[++i];
-                        }
-        		    }
-        		    else if (args[i].equals ("-p")) {
-                        // Obsolete -- but eat the next arg for compatibility
-                        if (i <args.length-1) {
-                            @SuppressWarnings("unused")
-                            String moduleParam = args[++i];
-                        }
-                    }
-        		    else if (args[i].equals ("-h")) {
-                        if (i < args.length-1) {
-                            handlerName = args[++i];
-                        }
-                    }
-        		    else if (args[i].equals ("-P")) {
-                        // Obsolete -- but eat the next arg for compatibility
-                        if (i <args.length-1) {
-                            @SuppressWarnings("unused")
-                            String handlerParam = args[++i];
-                        }
-        		    }
-        		    else if (args[i].equals ("-e")) {
-                        if (i < args.length-1) {
-                            encoding = args[++i];
-                        }
-        		    }
-        		    else if (args[i].equals ("-H")) {
-                        if (i < args.length-1) {
-                            aboutHandler = args[++i];
-                        }
-                    }
-        		    else if (args[i].equals ("-l")) {
-                        if (i < args.length-1) {
-                            logLevel = args[++i];
-                        }
-        		    }
-        		    else if (args[i].equals ("-o")) {
-                        if (i < args.length-1) {
-                            outputFile = args[++i];
-                        }
-                    }
-        		    else if (args[i].equals ("-x")) {
-                        i++;
-        		    }
-        		    else if (args[i].equals ("-t")) {
-                        if (i <args.length-1) {
-                            tempDir = args[++i];
-                        }
-                    }
-        		    else if (args[i].equals ("-b")) {
-                        if (i <args.length-1) {
-                            try {
-                                bufferSize = Integer.parseInt (args[++i]);
-                            }
-                            catch (NumberFormatException e) {
-                                System.err.println ("Invalid buffer size, using default.");
-                            }
-                        }
-        		    }
-        		    else if (args[i].equals ("-k")) {
-                        checksum = true;
-        		    }
-        		    else if (args[i].equals ("-r")) {
-                        showRaw = true;
-        		    }
-        		    else if (args[i].equals ("-s")) {
-                        signature = true;
-                    }
-        		    else if (args[i].charAt (0) != '-') {
-                        if (args[i].charAt (0) == '"') {
-                            filename = new StringBuffer ();
-                            filename.append (args[i].substring (1));
-                            quoted = true;
-                        }
-                        else {
-                            list.add (args[i]);
-                        }
-        		    }
-        		}
-            }
-            if (quoted) {
-                list.add (filename.toString ());
-    	    }
-    
-            JhoveBase je = new JhoveBase ();
-            je.setLogLevel (logLevel);
-            je.init (configFile, saxClass);
-            if (encoding == null) {
-                encoding = je.getEncoding ();
-            }
-            if (tempDir == null) {
-                tempDir = je.getTempDirectory ();
-            }
-            if (bufferSize < 0) {
-                bufferSize = je.getBufferSize ();
-            }
-            Module module = je.getModule  (moduleName);
-            if (module == null && moduleName != null) {
-                System.out.println ("Module '" + moduleName + "' not found");
-                System.exit (-1);
-            }
-            OutputHandler about   = je.getHandler (aboutHandler);
-            if (about == null && aboutHandler != null) {
-                System.out.println ("Handler '" + aboutHandler + "' not found");
-                System.exit (-1);
-            }
-    	    OutputHandler handler = je.getHandler (handlerName);
-            if (handler == null && handlerName != null) {
-                System.out.println ("Handler '" + handlerName + "' not found");
-                System.exit (-1);
-            }
-    	    String [] dirFileOrUri = null;
-    	    int len = list.size ();
-            if (len > 0) {
-        		dirFileOrUri = new String [len];
-        		for (int i=0; i<len; i++) {
-        		    dirFileOrUri[i] = (String) list.get (i);
-        		}
-            }
-    
-    	    /**********************************************************
-    	     * Invoke the JHOVE engine.
-    	     **********************************************************/
-                
-            je.setEncoding (encoding);
-            je.setTempDirectory (tempDir);
-            je.setBufferSize (bufferSize);
-            je.setChecksumFlag (checksum);
-            je.setShowRawFlag (showRaw);
-            je.setSignatureFlag (signature);
-    	    je.dispatch (app, module, about, handler, outputFile, 
-    			 dirFileOrUri);
-    	}
-        catch (Exception e) {
-            e.printStackTrace (System.err);
-            System.exit (-1);
-        }
-    }
-    
-
-}

jhove/classes/JhoveView.java

@@ -1,229 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004-2008 by JSTOR and the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-import edu.harvard.hul.ois.jhove.viewer.*;
-import javax.swing.*;
-
-/**
- * JhoveView - JSTOR/Harvard Object Validation Environment.
- */
-public class JhoveView
-{
-    /******************************************************************
-     * PRIVATE CLASS FIELDS.
-     *
-     * Application constants.
-     ******************************************************************/
-
-    /** Application name. */
-    private static final String NAME = "JhoveView";
-
-    /** Application build date, YYYY, MM, DD. */
-    private static int [] _date;
-
-    /** Usage string is meaningless here. */
-    private static final String USAGE = null;
-    
-    /** Application release number. */
-    private static String _release;
-
-    /** Default character encoding */
-    //private static final String DEFAULT_ENCODING = "UTF-8";
-
-    /** Copyright information. */
-    private static final String RIGHTS = 
-        "Derived from software Copyright 2004-2011 " +
-        "by the President and Fellows of Harvard College. " +
-        "Version 1.7 and higher independently released. " +
-    	"Released under the GNU Lesser General Public License.";
-
-    /******************************************************************
-     * Configuration constants.
-     ******************************************************************/
-
-    /** Configuration file property. */
-//    private static final String CONFIG_PROPERTY = "edu.harvard.hul.ois." +
-//                                                  "jhove.config";
-    /** Jhove directory */
-//    private static final String JHOVE_DIR = "jhove";
-
-    /** Config directory */
-//    private static final String CONFIG_DIR = "conf";
-
-    /** SAX parser class property. */
-//    private static final String SAX_PROPERTY = "edu.harvard.hul.ois.jhove." +
-//                                               "saxClass";
-
-    /******************************************************************
-     * Action constants.
-     ******************************************************************/
-
-    /******************************************************************
-     * Exit code constants.
-     ******************************************************************/
-
-    /** General error. */
-    private static final int ERROR = -1;
-
-    /** Incompatible Java VM. */
-    private static final int INCOMPATIBLE_VM = -2;
-
-    /** File not writable. */
-    //private static final int FILE_NOT_WRITABLE = -11;
-
-    /** No module specified. */
-    //private static final int NO_MODULE = -21;
-
-    /** Module not found. */
-    //private static final int MODULE_NOT_FOUND = -22;
-
-    /** Output handler not found. */
-    //private static final int HANDLER_NOT_FOUND = -31;
-
-    /** No object specified. */
-    //private static final int NO_OBJECT = -41;
-
-    /** URL not accessible. */
-    //private static final int URL_NOT_ACCESSIBLE = -42;
-
-    /** File not found. */
-    //private static final int FILE_NOT_FOUND = -43;
-
-    /** File not readable. */
-    //private static final int FILE_NOT_READABLE = -44;
-
-    /** SAX parser not found. */
-    //private static final int PARSER_NOT_FOUND = -51;
-    
-
-    /******************************************************************
-     * PUBLIC CLASS METHODS.
-     ******************************************************************/
-
-    /**
-     *  Stub constructor.
-     */
-
-    private JhoveView ()
-    {
-    }
-
-    /**
-     * Application main entry point.
-     * @parm args Command line arguments
-     */
-    public static void main (String [] args)
-    {
-        _release = JhoveBase._release;     // Seems safer than final init
-        _date = JhoveBase.DATE;
-        /* Make sure we have a satisfactory version of Java. */
-        String version = System.getProperty ("java.vm.version");
-        if (version.compareTo ("1.4.0") < 0) {
-            //System.err.println (NAME + ": Java 1.4 or higher is required");
-            errorAlert ("Java 1.4 or higher is required");
-            System.exit (INCOMPATIBLE_VM);
-        }
-
-        // If we're running on a Macintosh, put the menubar at the top
-        // of the screen where it belongs.
-        System.setProperty ("apple.laf.useScreenMenuBar", "true");
-
-        App app = new App (NAME, _release, _date, USAGE, RIGHTS);
-        try {
-
-            /**********************************************************
-             * Retrieve the configuration file.
-             **********************************************************/
-    
-            String configFile = JhoveBase.getConfigFileFromProperties ();
-            String saxClass   = JhoveBase.getSaxClassFromProperties ();
-
-            /**********************************************************
-             * Initialization:
-             *  configFile  Configuration file pathname
-             *  saxClass    SAX parser class
-             **********************************************************/
-
-	    /* Pre-parse the command line for -c and -x config options. */
-	    boolean quoted = false;
-	    for (int i=0; i<args.length; i++) {
-		if (quoted) {
-		    int len = args[i].length ();
-		    if (args[i].charAt (len-1) == '"') {
-			quoted = false;
-		    }
-		}
-		else {
-		    if (args[i].equals ("-c")) {
-			if (i < args.length-1) {
-			    configFile = args[++i];
-			}
-		    }
-		    else if (args[i].equals ("-x")) {
-			if (i <args.length-1) {
-			    saxClass = args[++i];
-			}
-		    }
-		    else if (args[i].charAt (0) == '"') {
-			quoted = true;
-		    }
-		}
-	    }
-
-            
-            /**********************************************************
-             * Initialize the JHOVE engine.
-             **********************************************************/
-    
-            JhoveBase je = new JhoveBase ();
-            try {
-                je.init (configFile, saxClass);
-            }
-            catch (JhoveException e) {
-                errorAlert (e.getMessage ());
-                // Keep going, so user can correct in editor
-            }
-
-            // Create the main window to select a file.
-            
-            JhoveWindow jwin = new JhoveWindow (app, je);
-            jwin.setVisible (true);
-
-        }
-        catch (Exception e) {
-            e.printStackTrace (System.err);
-            System.exit (ERROR);
-        }
-    }
-    
-    /* Displays an error alert. */
-    private static void errorAlert (String msg)
-    {
-        JFrame hiddenFrame = new JFrame ();
-        // Truncate long messages so the alert isn't wider
-        // than the screen
-        if (msg.length() > 80) {
-            msg = msg.substring (0, 79) + "...";
-        }
-        JOptionPane.showMessageDialog (hiddenFrame, 
-            msg, "Jhove Error", JOptionPane.ERROR_MESSAGE);
-    }
-}

jhove/classes/PDump.java

@@ -1,115 +0,0 @@
-/**********************************************************************
- * PDump - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-import edu.harvard.hul.ois.jhove.module.pdf.*;
-import java.io.*;
-
-/**
- * Dump contents of PDF file in human-readable format.
- */
-public class PDump
-    extends Dump
-{
-    /******************************************************************
-     * MAIN ENTRY POINT.
-     ******************************************************************/
-
-    /**
-     * Main entry point.
-     * @param args Command line arguments
-     */
-    public static void main (String [] args)
-    {
-	if (args.length < 1) {
-	    System.err.println ("usage: java PDump file");
-	    System.exit (-1);
-	}
-
-	try {
-	    RandomAccessFile file = new RandomAccessFile (args[0], "r");
-	    Tokenizer tokenizer = new FileTokenizer (file);
-	    Token token = null;
-	    long offset = 0;
-	    while ((token = tokenizer.getNext ()) != null) {
-		System.out.print (leading (offset, 8) + offset + ": ");
-		if (token instanceof ArrayEnd) {
-		    System.out.println ("ArrayEnd");
-		}
-		else if (token instanceof ArrayStart) {
-		    System.out.println ("ArrayStart");
-		}
-		else if (token instanceof Comment) {
-		    System.out.println ("Comment \"" +
-					((Comment) token).getValue () + "\"");
-		}
-		else if (token instanceof DictionaryEnd) {
-		    System.out.println ("DictionaryEnd");
-		}
-		else if (token instanceof DictionaryStart) {
-		    System.out.println ("DictionaryStart");
-		}
-//		else if (token instanceof Hexadecimal) {
-//		    System.out.println ("Hexadecimal[" +
-//					(((Hexadecimal) token).isPDFDocEncoding () ?
-//					  "PDF" : "UTF-16") + "] \"" +
-//					((Hexadecimal) token).getValue () +
-//					"\"");
-//		}
-		else if (token instanceof Keyword) {
-		    System.out.println ("Keyword \"" +
-					((Keyword) token).getValue () + "\"");
-		}
-		else if (token instanceof Literal) {
-		    System.out.println ("Literal[" +
-					(((Literal)token).isPDFDocEncoding () ?
-					 "PDF" : "UTF-16") + "] \"" +
-					((Literal) token).getValue () + "\"");
-		}
-		else if (token instanceof Name) {
-		    System.out.println ("Name \"" +
-					((Name) token).getValue () + "\"");
-		}
-		else if (token instanceof Numeric) {
-		    Numeric numeric = (Numeric) token;
-		    if (numeric.isReal ()) {
-			System.out.println ("Numeric " + numeric.getValue ());
-		    }
-		    else {
-			System.out.println ("Numeric " +
-					    numeric.getIntegerValue ());
-		    }
-		}
-		else if (token instanceof Stream) {
-		    System.out.println ("Stream " +
-					((Stream) token).getLength ());
-		}
-		else {
-		    System.out.println (token);
-		}
-		offset = tokenizer.getOffset ();
-	    }
-	}
-	catch (Exception e) {
-	    e.printStackTrace (System.err);
-	    System.exit (-2);
-	}
-    }
-}

jhove/classes/TDump.java

@@ -1,361 +0,0 @@
-/**********************************************************************
- * TDump - JSTOR/Harvard Object Validation Environment
- * Copyright 2003-2004 by JSTOR and the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-import edu.harvard.hul.ois.jhove.module.tiff.*;
-import java.io.*;
-import java.util.*;
-
-/**
- * Dump contents of TIFF file in human-readable format.
- */
-public class TDump
-    extends Dump
-{
-    /******************************************************************
-     * PRIVATE CLASS FIELDS.
-     ******************************************************************/
-
-    /** Count of IFDs. */
-    private static int _nIFDs;
-    /** Sorted associative map of tags. */
-    private static Map _tags;
-
-    /******************************************************************
-     * MAIN ENTRY POINT.
-     ******************************************************************/
-
-    /**
-     * Main entry point.
-     * @param args Command line arguments
-     */
-    public static void main (String [] args)
-    {
-	if (args.length < 1) {
-	    System.err.println ("usage: java TDump [-bs] file");
-	    System.exit (-1);
-	}
-
-	String tiff = null;
-	boolean nobyte = false;
-	boolean nosub  = false;
-	for (int i=0; i<args.length; i++) {
-	    if (args[i].equals ("-b")) {
-		nobyte = true;
-	    }
-	    else if (args[i].equals ("-s")) {
-		nosub = true;
-	    }
-	    else if (tiff == null) {
-		tiff = args[i];
-	    }
-	}
-
-	/* Accumlate all tag definitions in a sorted map. */
-
-	_tags = new TreeMap ();
-
-	int err = 0;
-	try {
-
-	    /* Read TIFF header. */
-
-	    RandomAccessFile file = new RandomAccessFile (tiff, "r");
-	    boolean bigEndian = true;
-	    int b1 = ModuleBase.readUnsignedByte (file);
-	    int b2 = ModuleBase.readUnsignedByte (file);
-	    if (b1 == 0x49 && b2 == b1) {
-		bigEndian = false;
-	    }
-	    int magic = ModuleBase.readUnsignedShort (file, bigEndian);
-	    long offset = ModuleBase.readUnsignedInt (file, bigEndian);
-	    _tags.put ("00000000", "\"" + ((char) b1) + ((char) b2) + "\" (" +
-		       (bigEndian ? "big" : "little") + " endian) " + magic +
-		       " LONG @" + offset);
-
-	    /* Read IFDs. */
-
-	    _nIFDs = 0;
-	    while ((offset = readIFD (file, bigEndian, offset, nobyte,
-				      nosub)) > 0) {
-	    }
-	    file.close ();
-	}
-	catch (Exception e) {
-	    e.printStackTrace (System.out);
-	    err = -2;
-	}
-	finally {
-
-	    /* Display all tags in offset-sorted order. */
-
-	    Iterator iter = _tags.keySet ().iterator ();
-	    while (iter.hasNext ()) {
-		String os = (String) iter.next ();
-		System.out.println (os + ": " + (String) _tags.get (os));
-	    }
-	    if (err != 0) {
-		System.exit (err);
-	    }
-	}
-    }
-
-    /**
-     * Read IFDs.
-     * @param file      Open TIFF file
-     * @param bigEndian True if big-endian
-     * @param offset    Byte offset of IFD
-     * @param nobyte    If true, only display the first 8 bytes of data of
-     *                  type BYTE
-     * @param nosub     If true, do not parse subIFDs
-     */
-    private static long readIFD (RandomAccessFile file, boolean bigEndian,
-				 long offset, boolean nobyte, boolean nosub)
-	throws Exception
-    {
-	int nIFD = ++_nIFDs;
-	List subIFDs = new ArrayList ();
-	List stripByteCounts = new ArrayList ();
-	List stripOffsets    = new ArrayList ();
-
-	file.seek (offset);
-	int nEntries = ModuleBase.readUnsignedShort (file, bigEndian);
-	_tags.put (leading (offset, 8) + offset, "IFD " + nIFD + " with " +
-	       nEntries + " entries");
-
-	String name = null;
-	for (int i=0; i<nEntries; i++) {
-	    long os = offset + 2 + i*12;
-	    file.seek (os);
-	    int  tag   = ModuleBase.readUnsignedShort (file, bigEndian);
-	    int  type  = ModuleBase.readUnsignedShort (file, bigEndian);
-	    long count = ModuleBase.readUnsignedInt   (file, bigEndian);
-
-	    StringBuffer buffer = new StringBuffer (tag + " (" +
-						    TiffTags.tagName(tag) +
-						    ") " + IFD.TYPE[type] +
-						    " " + count);
-	    if (type == IFD.ASCII) {
-		if (count > 4) {
-		    long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		    file.seek (vo);
-
-		    buffer.append (" @" + vo);
-		}
-		StringBuffer ascii = new StringBuffer ();
-		for (int j=0; j<count-1; j++) {
-		    ascii.append ((char) ModuleBase.readUnsignedByte (file));
-		}
-		buffer.append (" = \"" + ascii.toString () + "\"");
-	    }
-	    else if (type == IFD.BYTE ||
-		     type == IFD.UNDEFINED) {
-		if (count > 4) {
-		    long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		    file.seek (vo);
-
-		    buffer.append (" @" + vo);
-		}
-		buffer.append (" =");
-		long ct = count;
-		if (nobyte && count > 8) {
-		    ct = 8;
-		}
-		for (int j=0; j<ct; j++) {
-		    long by = ModuleBase.readUnsignedByte (file);
-		    buffer.append (" " + by);
-		}
-		if (nobyte && count > 8) {
-		    buffer.append (" ...");
-		}
-	    }
-	    else if (type == IFD.DOUBLE) {
-		long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		file.seek (vo);
-
-		buffer.append (" @" + vo + " =");
-		for (int j=0; j<count; j++) {
-		    double db = ModuleBase.readDouble (file, bigEndian);
-		    buffer.append (" " + db);
-		}
-	    }
-	    else if (type == IFD.FLOAT) {
-		if (count > 1) {
-		    long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		    file.seek (vo);
-
-		    buffer.append (" @" + vo);
-		}
-		buffer.append (" =");
-		for (int j=0; j<count; j++) {
-		    float fl = ModuleBase.readFloat (file, bigEndian);
-		    buffer.append (" " + fl);
-		}
-	    }
-	    else if (type == IFD.LONG || type == IFD.IFD) {
-		if (count > 1) {
-		    long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		    file.seek (vo);
-
-		    buffer.append (" @" + vo + " = ");
-		}
-		else if (tag == 330   ||   /* Sub IFD */
-			 tag == 34665 ||   /* EXIF IFD */
-			 tag == 34853 ||   /* EXIF GPS IFD */
-			 tag == 40965) {   /* EXIF Interoperability IFD */
-		    buffer.append (" @");
-		}
-		else {
-		    buffer.append (" = ");
-		}
-		for (int j=0; j<count; j++) {
-		    long in = ModuleBase.readUnsignedInt (file, bigEndian);
-		    if (j > 0) {
-			buffer.append (" ");
-		    }
-		    buffer.append (in);
-
-		    if (tag == 330   ||   /* Sub IFD */
-			tag == 34665 ||   /* EXIF IFD */
-			tag == 34853 ||   /* EXIF GPS IFD */
-			tag == 40965) {   /* EXIF Interoperability IFD */
-			subIFDs.add (new Long (in));
-		    }
-		    else if (tag == 273) {
-			stripOffsets.add (new Long (in));
-		    }
-		    else if (tag == 279) {
-			stripByteCounts.add (new Long (in));
-		    }
-		}
-	    }
-	    else if (type == IFD.RATIONAL) {
-		long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		file.seek (vo);
-
-		buffer.append (" @" + vo + " =");
-		for (int j=0; j<count; j++) {
-		    long numer = ModuleBase.readUnsignedInt (file, bigEndian);
-		    long denom = ModuleBase.readUnsignedInt (file, bigEndian);
-		    buffer.append (" " + numer + "/" + denom);
-		}
-	    }
-	    else if (type == IFD.SBYTE) {
-		if (count > 4) {
-		    long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		    file.seek (vo);
-
-		    buffer.append (" @" + vo);
-		}
-		buffer.append (" =");
-		for (int j=0; j<count; j++) {
-		    long by = ModuleBase.readSignedByte (file);
-		    buffer.append (" " + by);
-		}
-	    }
-	    else if (type == IFD.SHORT) {
-		if (count > 2) {
-		    long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		    file.seek (vo);
-
-		    buffer.append (" @" + vo);
-		}
-		buffer.append (" =");
-		for (int j=0; j<count; j++) {
-		    int sh = ModuleBase.readUnsignedShort (file, bigEndian);
-		    buffer.append (" " + sh);
-
-		    if (tag == 273) {
-			stripOffsets.add (new Long ((long) sh));
-		    }
-		    else if (tag == 279) {
-			stripByteCounts.add (new Long ((long) sh));
-		    }
-
-		}
-	    }
-	    else if (type == IFD.SLONG) {
-		if (count > 1) {
-		    long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		    file.seek (vo);
-
-		    buffer.append (" @" + vo);
-		}
-		buffer.append (" =");
-		for (int j=0; j<count; j++) {
-		    int in = ModuleBase.readSignedInt (file, bigEndian);
-		    buffer.append (" " + in);
-		}
-	    }
-	    else if (type == IFD.SRATIONAL) {
-		long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		file.seek (vo);
-
-		buffer.append (" @" + vo + " =");
-		for (int j=0; j<count; j++) {
-		    long numer = ModuleBase.readSignedInt (file, bigEndian);
-		    long denom = ModuleBase.readSignedInt (file, bigEndian);
-		    buffer.append (" " + numer + "/" + denom);
-		}
-	    }
-	    else if (type == IFD.SSHORT) {
-		if (count > 2) {
-		    long vo = ModuleBase.readUnsignedInt (file, bigEndian);
-		    file.seek (vo);
-
-		    buffer.append (" @" + vo);
-		}
-		buffer.append (" =");
-		for (int j=0; j<count; j++) {
-		    int sh = ModuleBase.readSignedShort (file, bigEndian);
-		    buffer.append (" " + sh);
-		}
-	    }
-	    _tags.put (leading (os, 8) + os, buffer.toString ());
-	}
-
-	if (!nosub) {
-	    for (int i=0; i<subIFDs.size (); i++) {
-		long os = ((Long) subIFDs.get (i)).longValue ();
-		while ((os = readIFD (file, bigEndian, os, nobyte, nosub)) > 0) {
-		}
-	    }
-	}
-
-	long os = offset + 2 + nEntries*12;
-	file.seek (os);
-	long next = ModuleBase.readUnsignedInt (file, bigEndian);
-	_tags.put (leading (os, 8) + os, "NextIFDOffset LONG @" + next);
-
-	int len = stripOffsets.size ();
-	if (len > 0) {
-	    for (int j=0; j<len; j++) {
-		long start = ((Long) stripOffsets.get (j)).longValue ();
-		long count = ((Long) stripByteCounts.get (j)).longValue ();
-		long finish= start + count - 1;
-		_tags.put (leading (start, 8) + start, "(Image " + nIFD +
-			   ",strip " + (j+1) + ") IMAGEDATA " + count +
-			   ": ... " + leading (finish, 8) + finish);
-	    }
-	}
-
-	return next;
-    }
-}

jhove/classes/UserHome.java

@@ -1,33 +0,0 @@
-/**********************************************************************
- * UserHome - JSTOR/Harvard Object Validation Environment
- * Copyright 2006 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import java.io.*;
-
-/**
- * Determine the default value of the Java user.home property.
- */
-public class UserHome
-{
-    public static void main (String [] args)
-    {
-	System.out.println ("Default user.home is \"" +
-			    System.getProperty ("user.home") + "\"");
-    }
-}

jhove/classes/WDump.java

@@ -1,196 +0,0 @@
-/**********************************************************************
- * JDump - JSTOR/Harvard Object Validation Environment
- * Copyright 2004-2005 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-import edu.harvard.hul.ois.jhove.*;
-import java.io.*;
-
-/**
- * Dump contents of WAVE file in human-readable format.
- *
- * @author Gary McGath
- *
- */
-public class WDump extends Dump {
-
-    /* Fixed value for first 4 bytes */
-    private static final int[] sigByte =
-       { 0X52, 0X49, 0X46, 0X46 };
-
-    private static final boolean ENDIAN = false;     /* little endian */
-
-    /******************************************************************
-     * MAIN ENTRY POINT.
-     ******************************************************************/
-
-    /**
-     * Main entry point.
-     * @param args Command line arguments
-     */
-    public static void main (String [] args)
-    {
-        if (args.length < 1) {
-            System.err.println ("usage: java WDump file");
-            System.exit (-1);
-        }
-        try {
-            FileInputStream file = new FileInputStream (args[0]);
-            BufferedInputStream buffer = new BufferedInputStream (file);
-            DataInputStream stream = new DataInputStream (buffer);
-            ADump dump = new ADump ();   // Just to access contained classes
-            long os = 0;
-            for (int i=0; i<4; i++) {
-                int ch;
-                ch = stream.readUnsignedByte();
-                if (ch != sigByte[i]) {
-                    System.out.println ("No AIFF FORM header");
-                    System.exit (-2);
-                }
-		os++;
-            }
-            long ckSize = ModuleBase.readUnsignedInt (stream, ENDIAN);
-	    os += 4;
-            
-            // Read the file type
-            String formType = read4Chars (stream);
-	    os += 4;
-
-	    System.out.println ("00000000: RIFF " + ckSize + ": " + formType);
-
-            boolean endOfFile = false;
-            while (!endOfFile) {
-                // Read chunks
-                try {
-                    // Read chunk name.
-                    String ckID = read4Chars (stream);
-                    // Read size (excluding chunk name and size fields)
-		    ckSize = ModuleBase.readUnsignedInt (stream, ENDIAN);
-                    System.out.print (leading (os, 8) + os + ": " + ckID +
-				      " " + ckSize);
-		    long alreadyRead = 0;
-		    if (ckID.equals ("fact")) {
-			long sampleLength =
-			    ModuleBase.readUnsignedInt (stream, ENDIAN);
-			System.out.print (": " + sampleLength);
-			alreadyRead = 4;
-		    }
-		    else if (ckID.equals ("fmt ")) {
-			int formatTag = ModuleBase.readUnsignedShort (stream,
-								      ENDIAN);
-			int channels = ModuleBase.readUnsignedShort (stream,
-								     ENDIAN);
-			long samplesPerSec =
-			    ModuleBase.readUnsignedInt (stream, ENDIAN);
-			long avgBytesPerSec =
-			    ModuleBase.readUnsignedInt (stream, ENDIAN);
-			int blockAlign = ModuleBase.readUnsignedShort (stream,
-								       ENDIAN);
-			String hex = Integer.toHexString (formatTag);
-			System.out.print (": 0x" + leading (hex, 4) + hex +
-					  " " + channels + " " +
-					  samplesPerSec + " " +
-					  avgBytesPerSec + " " + blockAlign);
-			alreadyRead = 14;
-			if (ckSize > 14) {
-			    int bitsPerSample =
-				ModuleBase.readUnsignedShort (stream, ENDIAN);
-			    System.out.print (" " + bitsPerSample);
-			    alreadyRead = 16;
-			    if (ckSize > 16) {
-				int size =
-				    ModuleBase.readUnsignedShort (stream,
-								  ENDIAN);
-				System.out.print (" " + size);
-				alreadyRead = 18;
-				if (size == 22) {
-				    int validBitsPerSample =
-					ModuleBase.readUnsignedShort (stream,
-								      ENDIAN);
-				    long channelMask =
-					ModuleBase.readUnsignedInt (stream,
-								    ENDIAN);
-				    hex = Long.toHexString (channelMask);
-				    System.out.print (" " +
-						      validBitsPerSample +
-						      " 0x" +
-						      leading (hex, 8) + hex +
-						      " 0x");
-				    for (int i=0; i<4; i++) {
-					long guid =
-					    ModuleBase.readUnsignedInt (
-								  stream,
-								  ENDIAN);
-					hex = Long.toHexString (guid);
-					System.out.print (leading (hex, 8) +
-							  hex);
-				    }
-				    alreadyRead = 40;
-				}
-			    }
-			}
-		    }
-		    System.out.println ();
-
-                    if (ckID.equals ("list") || ckID.equals ("LIST")) {
-                        readNestedChunks (ckID, stream, ckSize, os + 8);
-                    }
-                    else {
-                        stream.skipBytes ((int) (ckSize - alreadyRead));
-                    }
-                    os += ckSize + 8;
-                }
-                catch (EOFException e) {
-                    endOfFile = true;
-                }
-            }
-        }
-        catch (Exception e) {
-        }
-    }
-    
-    /* The "list" and "LIST" chunks (which are two distinct chunk types)
-       hold nested chunks. */
-    private static void readNestedChunks 
-            (String ckID, DataInputStream stream, long ckSize, long os)
-            throws IOException
-    {
-        String listType = read4Chars (stream);
-        System.out.println ("List type = " + listType);
-        while (ckSize > 0) {
-            String subCkID = read4Chars (stream);
-            long subCkSize = ModuleBase.readUnsignedInt (stream, ENDIAN, null);
-            System.out.println (leading (os, 8) + os + ": " +
-                    ckID + "/" + subCkID + " " + subCkSize);
-            stream.skipBytes ((int) subCkSize);
-            os += subCkSize + 8;
-            ckSize -= subCkSize + 8;
-        }
-    }
-    
-    private static String read4Chars (DataInputStream stream) 
-            throws IOException
-    {
-        StringBuffer sbuf = new StringBuffer(4);
-        for (int i = 0; i < 4; i++) {
-            int ch = ModuleBase.readUnsignedByte(stream, null);
-            sbuf.append((char) ch);
-        }
-        return sbuf.toString ();
-    }
-}

jhove/classes/build.xml

@@ -1,128 +0,0 @@
-<project name="Jhove" default="main-dist" basedir=".">
-  <description>Main build file
-    Jhove - JSTOR/Harvard Object Validation Environment
-    Version 1.1 2006-02-13
-    Copyright 2004-2006 by JSTOR and the President and Fellows of Harvard College
-  </description>
-
-  <!-- set global properties for this build -->
-  <property name="classpath" value=".:../bin/jhove.jar"/>
-  <property name="api" location="edu/harvard/hul/ois/jhove"/>
-  <property name="viewer" location="edu/harvard/hul/ois/jhove/viewer"/>
-  <property name="root" location=".."/>
-  <property name="manifest" location="${viewer}/META-INF"/>
-
-  <target name="main-init" description="Create the time stamp">
-    <tstamp>
-      <format property="timestamp.isoformat" pattern="yyyy-MM-dd'T'HH:mm:ss"/>
-    </tstamp>
-  </target>
-
-  <target name="main-dist" depends="api,main,view"/>
-
-  <target name="api" description="Compile the API">
-    <ant dir="${api}" inheritAll="false">
-      <property name="dbg" value="${dbg}"/>
-    </ant>
-  </target>
-
-  <target name="main-compile" depends="main-init"
-          description="Compile the main file">
-    <javac compiler="javac1.5" target="1.5" srcdir="." debug="${dbg}" classpath="${classpath}"/>
-  </target>
-
-  <target name="main" depends="main-compile, app-manifest"
-          description="Build the app jar">
-    <jar destfile="${root}/bin/JhoveApp.jar" basedir="." index="true"
-         manifest="./META-INF/MANIFEST.MF"
-         includes="Jhove.class,
-              GDump.class, JDump.class, PDump.class, TDump.class,
-              J2Dump.class,J2Dump$Box.class,
-              ADump.class,
-              WDump.class, UserHome.class,
-              edu/harvard/hul/ois/jhove/*.class,
-              edu/harvard/hul/ois/jhove/*.xsd,
-              edu/harvard/hul/ois/jhove/handler/*.class,
-              edu/harvard/hul/ois/jhove/handler/audit/*.class,
-              edu/harvard/hul/ois/jhove/module/*.class,
-              edu/harvard/hul/ois/jhove/module/aiff/*.class,
-              edu/harvard/hul/ois/jhove/module/gif/*.class,
-              edu/harvard/hul/ois/jhove/module/html/*.class,
-              edu/harvard/hul/ois/jhove/module/html/*.dtd,
-              edu/harvard/hul/ois/jhove/module/html/*.ent,
-              edu/harvard/hul/ois/jhove/module/iff/*.class,
-              edu/harvard/hul/ois/jhove/module/jpeg/*.class,
-              edu/harvard/hul/ois/jhove/module/jpeg2000/*.class,
-              edu/harvard/hul/ois/jhove/module/pdf/*.class,
-              edu/harvard/hul/ois/jhove/module/tiff/*.class,
-              edu/harvard/hul/ois/jhove/module/wave/*.class,
-	      edu/harvard/hul/ois/jhove/module/xml/*.class"/>
-  </target>
-
-  <target name="app-manifest" depends="main-init">
-    <mkdir dir="${manifest}"/>
-    <manifest file="./META-INF/MANIFEST.MF">
-      <attribute name="Built-By" value="${user.name}"/>
-      <attribute name="Built-On" value="${timestamp.isoformat}"/>
-      <attribute name="Main-Class" value="Jhove"/>
-      <section name="JHOVE">
-        <attribute name="Version" value="1.0"/>
-        <attribute name="Package" value="Jhove app"/>
-        <attribute name="Rights"  value="Copyright 2004-2006 by JSTOR and the President and Fellows of Harvard College"/>
-      </section>
-    </manifest>
-  </target>
-
-  <target name="view-manifest" depends="main-init">
-    <mkdir dir="${manifest}"/>
-    <manifest file="${manifest}/MANIFEST.MF">
-      <attribute name="Built-By" value="${user.name}"/>
-      <attribute name="Built-On" value="${timestamp.isoformat}"/>
-      <attribute name="Main-Class" value="JhoveView"/>
-      <section name="JHOVE">
-        <attribute name="Version" value="1.0"/>
-        <attribute name="Package" value="Swing Viewer"/>
-        <attribute name="Rights"  value="Copyright 2004-2006 by JSTOR and the President and Fellows of Harvard College"/>
-      </section>
-    </manifest>
-  </target>
-
-  <target name="view" description="Compile the viewer application" 
-             depends="api,main,view-manifest">
-    <jar destfile="${root}/bin/JhoveView.jar" basedir="." index="true"
-         manifest="${manifest}/MANIFEST.MF"
-         includes="JhoveView.class,
-              edu/harvard/hul/ois/jhove/*.class,
-              edu/harvard/hul/ois/jhove/handler/*.class,
-              edu/harvard/hul/ois/jhove/handler/audit/*.class,
-              edu/harvard/hul/ois/jhove/module/*.class,
-              edu/harvard/hul/ois/jhove/module/aiff/*.class,
-              edu/harvard/hul/ois/jhove/module/gif/*.class,
-              edu/harvard/hul/ois/jhove/module/html/*.class,
-              edu/harvard/hul/ois/jhove/module/html/*.dtd,
-              edu/harvard/hul/ois/jhove/module/html/*.ent,
-              edu/harvard/hul/ois/jhove/module/iff/*.class,
-              edu/harvard/hul/ois/jhove/module/jpeg/*.class,
-              edu/harvard/hul/ois/jhove/module/jpeg2000/*.class,
-              edu/harvard/hul/ois/jhove/module/pdf/*.class,
-              edu/harvard/hul/ois/jhove/module/tiff/*.class,
-              edu/harvard/hul/ois/jhove/module/wave/*.class,
-              edu/harvard/hul/ois/jhove/module/xml/*.class,
-              edu/harvard/hul/ois/jhove/viewer/*.gif,
-              edu/harvard/hul/ois/jhove/viewer/*.class"/>
-  </target>
-
-  <target name="main-clean">
-    <delete>
-      <fileset dir="." includes="*~ \#*"/>
-    </delete>
-    <ant dir="${api}" target="api-clean" inheritAll="false"/>
-  </target>
-
-  <target name="main-cleanclass">
-    <delete>
-      <fileset dir="." includes="*.class*"/>
-    </delete>
-    <ant dir="${api}" target="api-cleanclass" inheritAll="false"/>
-  </target>
-</project>

jhove/classes/edu/harvard/hul/ois/jhove/AESAudioMetadata.java

@@ -1,940 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004-2005 by JSTOR and the President and Fellows of Harvard College
- *
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.util.*;
-
-/**
- * Encapsulation of the AES Metadata for Audio documents
- *
- * @author Gary McGath
- *
- */
-public class AESAudioMetadata 
-{
-    /******************************************************************
-     * PUBLIC CLASS FIELDS.
-     ******************************************************************/
-
-    /** Big-endian constant. */
-    public static final int BIG_ENDIAN = 0;
-
-    /** Little-endian constant. */
-    public static final int LITTLE_ENDIAN = 1;
-
-    /** Analog / digital labels. */
-    public static final String [] A_D = {
-    "ANALOG", "PHYS_DIGITAL", "FILE_DIGITAL"
-    };
-    
-    /** Values for primary identifier type */
-    public static final String
-        FILE_NAME = "FILE_NAME",
-        OTHER = "OTHER";
-
-    /** Constant for an undefined integer value. */
-    public static final int NULL = -1;
-    /** Constant for an undefined floating-point value. */
-    public static final double NILL = -1.0;
-
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     *
-     ******************************************************************/
-
-    /** Constant value for the SchemaVersion field */
-    public static final String SCHEMA_VERSION = "1.02b";
-    
-    /** Constant value for the disposition field */
-    private static final String DEFAULT_DISPOSITION = "validation";
-
-    private String _analogDigitalFlag;
-    private String _appSpecificData;
-    private String _audioDataEncoding;
-    private int _byteOrder;
-    private String _disposition;
-    private List _faceList;
-    private long _firstSampleOffset;
-    private String _format;
-    private List _formatList;
-    private int _numChannels;
-    private String _primaryIdentifier;
-    private String _primaryIdentifierType;
-    private String _primaryIdentifierOtherType;
-    private String _schemaVersion;
-    private String _specificationVersion;
-    private String[] _use;
-
-    /* Most recently added FormatRegion */
-    private FormatRegion _curFormatRegion;
-    /* Most recently added Face */
-    private Face _curFace;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** Instantiate a <code>NisoImageMetadata</code> object.
-     */
-    public AESAudioMetadata ()
-    {
-        _schemaVersion = SCHEMA_VERSION;
-        _disposition = DEFAULT_DISPOSITION;
-        _analogDigitalFlag = null;
-        _format = null;
-        _specificationVersion = null;
-        _audioDataEncoding = null;
-        _primaryIdentifier = null;
-        _primaryIdentifierType = null;
-        _use = null;
-
-        // We add one format region to get started.  In practice,
-        // that one is all we're likely to need. but more can be
-        // added if necessary.
-        _formatList = new LinkedList ();
-        _faceList = new LinkedList ();
-        addFormatRegion ();
-        addFace ();
-        _numChannels = NULL;
-        _byteOrder = NULL;
-        _firstSampleOffset = NULL;
-    }
-    
-    /******************************************************************
-     * PUBLIC STATIC INTERFACES.
-     * 
-     ******************************************************************/
-    /**
-     *  Public interface to the nested FormatRegion object.  Instances
-     *  of this should be created only by addFormatRegion, but can be
-     *  accessed through the public methods of this interface.
-     */
-    public static interface FormatRegion {
-        /** Returns the bit depth. */
-        public int getBitDepth ();
-        /** Returns the bitrate reduction (compression information).
-         *  This will be an array of seven strings (which may be
-         *  empty, but should never be null) interpreted as follows:
-         *  <ul>
-         *  <li>0: codecName
-         *  <li>1: codecNameVersion
-         *  <li>2: codecCreatorApplication
-         *  <li>3: codecCreatorApplicationVersion
-         *  <li>4: codecQuality
-         *  <li>5: dataRate
-         *  <li>6: dataRateMode
-         *  </ul> 
-         */
-        public String[] getBitrateReduction ();
-        /** Returns the sample rate. */
-        public double getSampleRate ();
-        /** Returns the word size. */
-        int getWordSize ();
-        /** Returns <code>true</code> if the region is empty. */
-        public boolean isEmpty ();
-        /** Sets the bit depth value. */
-        public void setBitDepth (int bitDepth);
-        /** Sets the bitrate reduction information to null (no compression). */
-        public void clearBitrateReduction ();
-        /** Sets the bitrate reduction (aka compression type). */
-        public void setBitrateReduction (String codecName,
-                String codecNameVersion,
-                String codecCreatorApplication,
-                String codecCreatorApplicationVersion,
-                String codecQuality,
-                String dataRate,
-                String dataRateMode);
-        /** Sets the sample rate. */
-        public void setSampleRate (double sampleRate);
-        /** Sets the word size. */
-        public void setWordSize (int wordSize);
-    }
-
-    /**
-     *  Public interface to the nested TimeDesc object.  Instances
-     *  of this should be created only by appropriate methods, but can be
-     *  accessed through the public methods of this interface.
-     */
-    public static interface TimeDesc {
-        /** Returns the hours component. */
-        public int getHours ();
-        /** Returns the minutes component. */
-        public int getMinutes ();
-        /** Returns the seconds component. */
-        public int getSeconds ();
-        /** Returns the frames component of the fraction of a second.
-         *  We always consider frames to be thirtieths of a second. */
-        public int getFrames ();
-        /** Returns the samples remaining after the frames part of
-         *  the fractional second. */
-        public int getSamples ();
-        /** Returns the sample rate on which the samples remainder
-         *  is based. */
-        public double getSampleRate ();
-    }
-    
-    /** Public interface to the nested Face object. Instances
-     *  of this should be created only by appropriate methods, but can be
-     *  accessed through the public methods of this interface. */
-    public static interface Face {
-        /** Returns an indexed FaceRegion. */
-        public FaceRegion getFaceRegion (int i);
-        
-        /** Adds a FaceRegion. This may be called repeatedly to
-         *  add multiple FaceRegions. */
-        public void addFaceRegion ();
-        
-        /** Returns the starting time. */
-        public TimeDesc getStartTime ();
-        
-        /** Returns the duration. */
-        public TimeDesc getDuration ();
-        
-        /** Returns the direction. */
-        public String getDirection ();
-        
-        /** Sets the starting time.  This will be converted
-         *  into a TimeDesc. */
-        public void setStartTime (long samples);
-        
-        /** Sets the duration. This will be converted
-         *  into a TimeDesc. */
-        public void setDuration (long samples);
-        
-        /** Sets the direction.  This must be one of the
-         *  directionTypes.  FORWARD is recommended for most
-         *  or all cases. 
-         */
-        public void setDirection (String direction);
-
-        /* End of interface Face */
-    }
-    
-    /** Public interface to the nested FaceRegion object. Instances
-     *  of this should be created only by appropriate methods, but can be
-     *  accessed through the public methods of this interface. */
-    public static interface FaceRegion {
-        /** Returns the starting time. */
-        public TimeDesc getStartTime ();
-        
-        /** Returns the duration. */
-        public TimeDesc getDuration ();
-
-        /** Returns the channel map locations.  The array length must
-         *  equal the number of channels. */
-        public String[] getMapLocations ();
-
-        /** Sets the starting time. */
-        public void setStartTime (long samples);
-        
-        /** Sets the duration. */
-        public void setDuration (long samples);
-        
-        /** Sets the channel map locations.  The array length must
-         *  equal the number of channels. */
-        public void setMapLocations (String[] locations);
-
-        /* End of interface FaceRegion */
-    }
-
-    /******************************************************************
-     * STATIC MEMBER CLASSES.
-     * 
-     ******************************************************************/
-    /** The implementation of the FormatRegion interface.  The combination
-     *  of a public interface and a private implementation is suggested
-     *  in _Java in a Nutshell_.
-     */
-    class FormatRegionImpl implements FormatRegion {
-        
-        private int _bitDepth;
-        private double _sampleRate;
-        private int _wordSize;
-        private String[] _bitrateReduction;
-
-        public FormatRegionImpl () {
-            _bitDepth = NULL;
-            _sampleRate = NILL;
-            _wordSize = NULL;
-            _bitrateReduction = null;
-        }
-        
-        /** Returns bit depth. */
-        public int getBitDepth ()
-        {
-            return _bitDepth;
-        }
-        
-        /** Returns the bitrate reduction (compression information).
-         *  This will be an array of seven strings (which may be
-         *  empty but not null) interpreted respectively as follows:
-         *  <ul>
-         *  <li>0: codecName
-         *  <li>1: codecNameVersion
-         *  <li>2: codecCreatorApplication
-         *  <li>3: codecCreatorApplicationVersion
-         *  <li>4: codecQuality
-         *  <li>5: dataRate
-         *  <li>6: dataRateMode
-         *  </ul> 
-         */
-        public String[] getBitrateReduction ()
-        {
-            return _bitrateReduction;
-        }
-        
-        /** Returns sample rate. */
-        public double getSampleRate ()
-        {
-            return _sampleRate;
-        }
-        
-        /** Returns word size. */
-        public int getWordSize ()
-        {
-            return _wordSize;
-        }
-        
-        /** Returns true if the FormatRegion contains only
-         *  default values. */
-        public boolean isEmpty ()
-        {
-            return _bitDepth == NULL &&
-                   _sampleRate == NILL &&
-                   _wordSize == NULL;
-        }
-
-        /** Sets bit depth. */
-        public void setBitDepth (int bitDepth)
-        {
-            _bitDepth = bitDepth;
-        }
-
-        /** Sets the bitrate reduction information to null (no compression). */
-        public void clearBitrateReduction ()
-        {
-            _bitrateReduction = null;
-        }
-
-        /** Sets the bitrate reduction (compression type). */
-        public void setBitrateReduction (String codecName,
-                String codecNameVersion,
-                String codecCreatorApplication,
-                String codecCreatorApplicationVersion,
-                String codecQuality,
-                String dataRate,
-                String dataRateMode)
-        {
-            _bitrateReduction = new String[7];
-            _bitrateReduction[0] = codecName;
-            _bitrateReduction[1] = codecNameVersion;  
-            _bitrateReduction[2] = codecCreatorApplication;
-            _bitrateReduction[3] = codecCreatorApplicationVersion;
-            _bitrateReduction[4] = codecQuality;
-            _bitrateReduction[5] = dataRate;
-            _bitrateReduction[6] = dataRateMode;
-        }
-
-        /** Sets sample rate. */
-        public void setSampleRate (double sampleRate)
-        {
-            _sampleRate = sampleRate;
-        }
-        
-        
-        /** Sets word size. */
-        public void setWordSize (int wordSize)
-        {
-            _wordSize = wordSize;
-        }
-        
-        /* End of FormatRegionImpl */
-    }
-
-    /** The implementation of the TimeDesc interface.  The combination
-     *  of a public interface and a private implementation is suggested
-     *  in _Java in a Nutshell_.
-     */
-    class TimeDescImpl implements TimeDesc
-    {
-        private int _hours;
-        private int _minutes;
-        private int _seconds;
-        private int _frames;
-        private int _samples;
-        private double _sampleRate;
-	private int _frameCount;
-        
-	/* Constructor rewritten to avoid rounding errors when converting to
-	 * TCF. Now uses integer remainder math instead of floating point.
-	 * Changed the base unit from a double representing seconds to a long
-	 * representing samples. Changed all existing calls (that I could find)
-	 * to this method to accomodate this change.
-	 *
-	 * @author David Ackerman
-	 */
-        public TimeDescImpl (long samples)
-	{
-	    long _sample_count = samples;
-	    _frameCount = 30;
-	    _sampleRate = _curFormatRegion.getSampleRate ();
-			
-	    /* It seems that this method is initially called before a valid
-	     * sample rate has been established, causing a divide by zero
-	     * error.
-	     */
-	    if (_sampleRate < 0) {
-                _sampleRate = 44100.0; //reasonable default value 
-            }
-
-	    long sample_in_1_frame = (long)(_sampleRate/_frameCount);
-	    long sample_in_1_second = sample_in_1_frame * _frameCount;
-	    long sample_in_1_minute = sample_in_1_frame * _frameCount * 60;
-	    long sample_in_1_hour = sample_in_1_frame * _frameCount * 60 * 60;
-	    long sample_in_1_day = sample_in_1_frame * _frameCount * 60 * 60 * 24;
-			
-	    // BWF allows for a negative timestamp but tcf does not, so adjust
-	    // time accordingly
-	    // this might be a good place to report a warning during validation
-	    if (_sample_count < 0) {
-		_sample_count += sample_in_1_day;
-		_sample_count = (_sample_count % sample_in_1_day);
-	    }
-		
-	    _hours = (int)(_sample_count / sample_in_1_hour);
-	    _sample_count -= (_hours * sample_in_1_hour);
-	    _minutes = (int)(_sample_count / sample_in_1_minute);
-	    _sample_count -= (_minutes * sample_in_1_minute);
-	    _seconds = (int)(_sample_count / sample_in_1_second);
-	    _sample_count -= (_seconds * sample_in_1_second);
-	    _frames = (int)(_sample_count / sample_in_1_frame);
-	    _sample_count -= (_frames * sample_in_1_frame);
-	    _samples = (int)_sample_count;
-			
-	    /* At present TCF does not have the ability to handle time stamps
-	     * > midnight. Industry practice is to roll the clock forward to
-	     * zero or back to 23:59:59:29... when crossing this boundary
-	     * condition.
-	     */
-	    _hours = _hours % 24;	
-        }
-        
-        /** Returns the hours component. */
-        public int getHours () {
-            return _hours;
-        }
-
-        /** Returns the minutes component. */
-        public int getMinutes () {
-            return _minutes;
-        }
-
-        /** Returns the seconds component. */
-        public int getSeconds () {
-            return _seconds;
-        }
-
-        /** Returns the frames component of the fraction of a second.
-         *  We always consider frames to be thirtieths of a second. */
-        public int getFrames () {
-            return _frames;
-        }
-
-        /** Returns the samples remaining after the frames part of
-         *  the fractional second. */
-        public int getSamples () {
-            return _samples;
-        }
-        
-        /** Returns the sample rate on which the samples remainder
-         *  is based. */
-        public double getSampleRate () {
-            return _sampleRate;
-        }
-    } /* End of TimeDescImpl */
-
-    /** The implementation of the Face interface.  The combination
-     *  of a public interface and a private implementation is suggested
-     *  in _Java in a Nutshell_.
-     */
-    class FaceImpl implements Face {
-        List _regionList;
-        TimeDesc _startTime;
-        TimeDesc _duration;
-        String _direction;
-        
-        
-        /** Constructor.  Initially the duration is set
-         *  to null, indicating unknown value. */
-        public FaceImpl ()
-        {
-            _regionList = new ArrayList ();
-            _startTime = new TimeDescImpl (0);
-            _duration = null;
-        }
-
-
-        /** Returns an indexed FaceRegion. */
-        public FaceRegion getFaceRegion (int i) {
-            return (FaceRegion) _regionList.get (i);
-        }
-        
-        /** Adds a FaceRegion. This may be called repeatedly to
-         *  add multiple FaceRegions. */
-        public void addFaceRegion () {
-            _regionList.add (new FaceRegionImpl ());
-        }
-        
-        /** Returns the starting time. Will be zero if not
-         *  explicitly specified. */
-        public TimeDesc getStartTime () {
-            return _startTime;
-        }
-        
-        /** Returns the duration. May be null if the duration
-         *  is unspecified. */
-        public TimeDesc getDuration () {
-            return _duration;
-        }
-
-        /** Returns the direction. */
-        public String getDirection ()
-        {
-            return _direction;
-        }
-
-        /** Sets the starting time.  This will be converted
-         *  into a TimeDesc. */
-        public void setStartTime (long samples)
-        {
-            _startTime = new TimeDescImpl (samples);
-        }
-        
-        /** Sets the duration. This will be converted
-         *  into a TimeDesc. */
-        public void setDuration (long samples)
-        {
-            _duration = new TimeDescImpl (samples);
-        }
-
-        /** Sets the direction.  This must be one of the
-         *  directionTypes.  FORWARD is recommended for most
-         *  or all cases. 
-         */
-        public void setDirection (String direction)
-        {
-            _direction = direction;
-        }
-
-        /* End of FaceImpl */
-    }
-
-
-    /** The implementation of the Face interface.  The combination
-     *  of a public interface and a private implementation is suggested
-     *  in _Java in a Nutshell_.
-     */
-    class FaceRegionImpl implements FaceRegion {
-        private TimeDesc _startTime;
-        private TimeDesc _duration;
-        private String[] _mapLocations;
-        
-        public FaceRegionImpl ()
-        {
-            _startTime = new TimeDescImpl (0);
-            _duration = null;
-        }
-        
-        /** Returns the starting time. */
-        public TimeDesc getStartTime () {
-            return _startTime;
-        }
-        
-        /** Returns the duration. */
-        public TimeDesc getDuration () {
-            return _duration;
-        }
-        
-        /** Returns the channel map locations.  The array length
-         *  will equal the number of channels. */
-        public String[] getMapLocations ()
-        {
-            return _mapLocations;
-        }
-
-        /** Sets the duration. This will be converted
-         *  into a TimeDesc. */
-        public void setStartTime (long samples) {
-            _startTime = new TimeDescImpl (samples);
-        }
-        
-        /** Sets the duration. This will be converted
-         *  into a TimeDesc. */
-        public void setDuration (long samples)
-        {
-            _duration = new TimeDescImpl (samples);
-        }
-
-        /** Sets the channel map locations.  The array length must
-         *  equal the number of channels. */
-        public void setMapLocations (String[] locations)
-        {
-            _mapLocations = locations;
-        }        
-        /* End of FaceRegionImpl */
-    }
-   
-    /* End of inner classes */
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     * 
-     * Accessor methods.
-     ******************************************************************/
-
-    /** Returns analog/digital flag.  Value will always be
-     *  "FILE_DIGITAL" in practice. */
-    public String getAnalogDigitalFlag ()
-    {
-        return _analogDigitalFlag;
-    }
-    
-    /** Returns application-specific data.  We assume this is
-     *  representable in String format. 
-     */
-    public String getAppSpecificData ()
-    {
-        return _appSpecificData;
-    }
-    
-    /** Returns audio data encoding. */
-    public String getAudioDataEncoding ()
-    {
-        return _audioDataEncoding;
-    }
-
-    /** Returns the bitrate reduction (compression information).
-     *  This will be an array of seven strings (which may be
-     *  empty, but should never be null) interpreted as follows:
-     *  <ul>
-     *  <li>0: codecName
-     *  <li>1: codecNameVersion
-     *  <li>2: codecCreatorApplication
-     *  <li>3: codecCreatorApplicationVersion
-     *  <li>4: codecQuality
-     *  <li>5: dataRate
-     *  <li>6: dataRateMode
-     *  </ul> 
-     */
-    public String[] getBitrateReduction ()
-    {
-        return _curFormatRegion.getBitrateReduction();
-    }
-
-    /* Returns the sample rate. */
-    public double getSampleRate ()
-    {
-	return _curFormatRegion.getSampleRate ();
-    }
-
-    /** Return the byte order: 0 = big-endian; 1 = little-endian. */
-    public int getByteOrder ()
-    {
-        return _byteOrder;
-    }
-    
-    /** Returns disposition. */
-    public String getDisposition ()
-    {
-        return _disposition;
-    }
-    
-    /** Gets the list of Faces. Normally there will be only one face
-     *  in a digital file. */
-    public List getFaceList ()
-    {
-        return _faceList;
-    }
-    
-    /** Return the offset of the first byte of sample data. */
-    public long getFirstSampleOffset ()
-    {
-        return _firstSampleOffset;
-    }
-
-    /** Returns format name. */
-    public String getFormat ()
-    {
-        return _format;
-    }
-    
-    /** Gets the list of Format Regions.  Since one is created
-     *  automatically on initialization, it's possible that the
-     *  list will contain a Format Region with only default values.
-     *  This should be checked with isEmpty ().
-     */
-    public List getFormatList ()
-    {
-        return _formatList;
-    }
-    
-    /** Returns the names of the map locations.
-     *  The returned
-     *  value is an array whose length equals the number of
-     *  channels and whose elements correspond to channels 0, 1,
-     *  etc. 
-     */
-    public String[] getMapLocations() {
-        return _curFace.getFaceRegion(0).getMapLocations();
-    }
-    
-    /** Returns number of channels. */
-    public int getNumChannels ()
-    {
-        return _numChannels;
-    }
-
-    /** Returns primary identifier. */
-    public String getPrimaryIdentifier ()
-    {
-        return _primaryIdentifier;
-    }
-
-    /** Returns primary identifier type. */
-    public String getPrimaryIdentifierType ()
-    {
-        return _primaryIdentifierType;
-    }
-
-    /** Returns schema version. */
-    public String getSchemaVersion ()
-    {
-        return _schemaVersion;
-    }
-    
-    /** Returns specification version of the document format. */
-    public String getSpecificationVersion ()
-    {
-        return _specificationVersion;
-    }
-    
-    /** Returns the use (role of the document).
-     *  The value returned is an array of two strings,
-     *  the useType and the otherType. */
-    public String[] getUse ()
-    {
-        return _use;
-    }
-    
-
-    
-
-
-    /******************************************************************
-     * Mutator methods.
-     ******************************************************************/
-    
-    /** Sets the analog/digital flag.  The value set should always
-     *  be "FILE_DIGITAL". */
-    public void  setAnalogDigitalFlag (String flagType)
-    {
-        _analogDigitalFlag = flagType;
-    }
-
-    /** Sets the bitrate reduction (compression type). */
-    public void setBitrateReduction (String codecName,
-            String codecNameVersion,
-            String codecCreatorApplication,
-            String codecCreatorApplicationVersion,
-            String codecQuality,
-            String dataRate,
-            String dataRateMode)
-    {
-        _curFormatRegion.setBitrateReduction (codecName,
-                codecNameVersion, codecCreatorApplication,
-                codecCreatorApplicationVersion,
-                codecQuality, dataRate, dataRateMode);
-    }
-    
-    /** Set the bitrate reduction information to null (no compression). */
-    public void clearBitrateReduction ()
-    {
-        _curFormatRegion.clearBitrateReduction ();
-    }
-
-    /** Sets the byte order.
-     * @param order Byte order: 0 = big-endian, 1 = little-endian
-     */
-    public void setByteOrder (int order)
-    {
-	   _byteOrder = order;
-    }
-
-    /** Sets the byte order.
-     */
-    public void setByteOrder (String order)
-    {
-    	if (order.substring (0, 3).toLowerCase ().equals ("big")) {
-    	    _byteOrder = BIG_ENDIAN;
-    	}
-    	else if (order.substring (0, 6).toLowerCase ().equals ("little")) {
-    	    _byteOrder = LITTLE_ENDIAN;
-    	}
-    }
-
-    /** Sets the audio data encoding. */
-    public void setAudioDataEncoding (String audioDataEncoding)
-    {
-        _audioDataEncoding = audioDataEncoding;
-    }
-    
-    /** Set the application-specific data.  For present purposes,
-     *  we assume this is representable as a text string. */
-    public void setAppSpecificData (String data)
-    {
-        _appSpecificData = data;
-    }
-    
-    /** Sets the bit depth. */
-    public void setBitDepth (int bitDepth)
-    {
-        _curFormatRegion.setBitDepth (bitDepth);
-    }
-    
-    /** Sets the disposition. */
-    public void setDisposition (String disposition)
-    {
-        _disposition = disposition;
-    }
-
-    /** Sets the direction.  
-     *  This must be one of the values 
-     *  FORWARD, REVERSE, A_WIND, B_WIND, C_WIND, D_WIND,
-     *  FRONT, BACK.  FORWARD may be the only one that
-     *  makes sense for digital formats.
-     */
-    public void setDirection (String direction)
-    {
-        _curFace.setDirection (direction);
-    }
-    
-    /** Sets the duration in samples. 
-     * This affects the current face and its first FaceRegion.
-     */
-    public void setDuration (long duration)
-    {
-	_curFace.setDuration (duration);
-	_curFace.getFaceRegion(0).setDuration (duration);
-    }
-
-    /** Sets the offset of the first byte of sample data. */
-    public void setFirstSampleOffset (long offset)
-    {
-        _firstSampleOffset = offset;
-    }
-
-    /** Sets the format name. */
-    public void setFormat (String format)
-    {
-        _format = format;
-    }
-    
-    /** Sets the array of channel map locations. The length
-     *  of the array must equal the number of channels. */
-    public void setMapLocations (String[] locations) {
-        _curFace.getFaceRegion(0).setMapLocations (locations);
-    }
-
-    /** Sets the number of channels. */
-    public void setNumChannels (int numChannels)
-    {
-        _numChannels = numChannels;
-    }
-
-    /** Sets the primary identifier. */
-    public void setPrimaryIdentifier (String primaryIdentifier)
-    {
-        _primaryIdentifier = primaryIdentifier;
-    }
-    
-    /** Sets the primary identifier type. If the primary identifier
-     *  type is OTHER, use setOtherPrimaryIdentifierType instead.
-     */
-    public void setPrimaryIdentifierType (String primaryIdentifierType)
-    {
-        _primaryIdentifierType = primaryIdentifierType;
-    }
-
-    /** Sets the primary identifier type as "OTHER", and
-     *  set the otherType.
-     */
-    public void setOtherPrimaryIdentifierType (String otherType)
-    {
-        _primaryIdentifierType = "OTHER";
-        _primaryIdentifierOtherType = otherType;
-    }
-    
-    /** Sets the sample rate. */
-    public void setSampleRate (double sampleRate)
-    {
-        _curFormatRegion.setSampleRate (sampleRate);
-    }
-    
-    /** Sets the specification version of the document format.*/
-    public void setSpecificationVersion (String specificationVersion)
-    {
-        _specificationVersion = specificationVersion;
-    }
-
-    /** Sets the start time in samples. 
-     * This affects the current face and its first FaceRegion.
-     */
-    public void setStartTime (long samples)
-    {
-	_curFace.setStartTime (samples);
-	_curFace.getFaceRegion(0).setStartTime (samples);
-    }
-    
-    /** Sets the role of the document. Permitted values are
-     *  ORIGINAL_MASTER, PRESERVATION_MASTER, PRODUCTION_MASTER, 
-     *  SERVICE, PREVIEW, or OTHER.
-     *  If useType is "OTHER", then otherType
-     *  is significant.  Since OTHER is the only meaningful
-     *  value for a digital document, the code assumes this will always
-     *  be the case and uses otherType. */
-    public void setUse (String useType, String otherType)
-    {
-        _use = new String[] {useType, otherType};
-    }
-    
-    /** Sets the word size. */
-    public void setWordSize (int wordSize)
-    {
-        _curFormatRegion.setWordSize (wordSize);
-    }
-    
-    /** Adds a FormatRegion object to a FormatSize list.
-     *  The most recently added FormatRegion object will
-     *  be filled in by setBitDepth, setSampleRate, and
-     *  setWordSize.
-     */
-    public void addFormatRegion ()
-    {
-        _curFormatRegion = new FormatRegionImpl ();
-        _formatList.add (_curFormatRegion);
-    }
-    
-    /** Adds a Face.  
-     */
-    public void addFace ()
-    {
-        _curFace = new FaceImpl ();
-        _faceList.add (_curFace);
-        _curFace.addFaceRegion();
-    }
-    
-}

jhove/classes/edu/harvard/hul/ois/jhove/Agent.java

@@ -1,167 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  Encapsulates information about agents, either individual 
- *  persons or corporate bodies.
- */
-public class Agent
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    private String _name;
-    private AgentType _type;
-    private String _address;
-    private String _telephone;
-    private String _fax;
-    private String _email;
-    private String _web;
-    private String _note;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     *  Creates an Agent given a name and an AgentType.
-     */
-    public Agent (String name, AgentType type)
-    {
-	_name = name;
-	_type = type;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     ******************************************************************/
-
-    /**
-     *  Returns the value of the address property.
-     */
-    public String getAddress ()
-    {
-	return _address;
-    }
-
-    /**
-     *  Returns the value of the email property.
-     */
-    public String getEmail ()
-    {
-	return _email;
-    }
-
-    /**
-     *  Returns the value of the fax property.
-     */
-    public String getFax ()
-    {
-	return _fax;
-    }
-
-    /**
-     *  Returns the value of the name property.
-     */
-    public String getName ()
-    {
-	return _name;
-    }
-
-    /**
-     *  Returns the value of the note property.
-     */
-    public String getNote ()
-    {
-	return _note;
-    }
-
-    /**
-     *  Returns the value of the telephone property.
-     */
-    public String getTelephone ()
-    {
-	return _telephone;
-    }
-
-    /**
-     *  Returns the value of the type property.
-     */
-    public AgentType getType ()
-    {
-	return _type;
-    }
-
-    /**
-     *  Returns the value of the web property.
-     */
-    public String getWeb ()
-    {
-	return _web;
-    }
-
-    /******************************************************************
-     * Mutator methods.
-     ******************************************************************/
-
-    /**
-     *  Sets the value of the address property.
-     */
-    public void setAddress (String address)
-    {
-	_address = address;
-    }
-
-    /**
-     *  Sets the value of the email property.
-     */
-    public void setEmail (String email)
-    {
-	_email = email;
-    }
-
-    /**
-     *  Sets the value of the fax property.
-     */
-    public void setFax (String fax)
-    {
-	_fax = fax;
-    }
-
-    /**
-     *  Sets the value of the name property.
-     */
-    public void setName (String name)
-    {
-	_name = name;
-    }
-
-    /**
-     *  Sets the value of the note property.
-     */
-    public void setNote (String note)
-    {
-	_note = note;
-    }
-
-    /**
-     *  Sets the value of the telephone property.
-     */
-    public void setTelephone (String telephone)
-    {
-	_telephone = telephone;
-    }
-
-    /**
-     *  Sets the value of the web property.
-     */
-    public void setWeb (String web)
-    {
-	_web = web;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/AgentType.java

@@ -1,60 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class defines enumerated types for an Agent. 
- *  Applications will not create or modify AgentTypes, but will
- *  use one of the predefined AgentType instances COMMERCIAL, GOVERNMENT,
- *  EDUCATIONAL, NONPROFIT, STANDARD, or OTHER.
- *
- *  @see Agent
- */
-public final class AgentType
-    extends EnumerationType
-{
-    /******************************************************************
-     * PUBLIC STATIC INSTANCES.
-     ******************************************************************/
-
-    /**
-     *  Agent type for a commercial entity.
-     */
-    public static final AgentType COMMERCIAL = new AgentType ("Commercial");
-    /**
-     *  Agent type for a governmental body.
-     */
-    public static final AgentType GOVERNMENT = new AgentType ("Government");
-    /**
-     *  Agent type for an educational institution.
-     */
-    public static final AgentType EDUCATIONAL = new AgentType ("Educational");
-    /**
-     *  Agent type for a non-profit organization.
-     */
-    public static final AgentType NONPROFIT = new AgentType ("Non-profit");
-    /**
-     *  Agent type for a standards body.
-     */
-    public static final AgentType STANDARD = new AgentType ("Standards body");
-    /**
-     *  Agent type that doesn't fit the other categories.
-     */
-    public static final AgentType OTHER = new AgentType ("Other");
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Applications will never create AgentTypes directly.
-     **/
-    private AgentType (String value)
-    {
-	super (value);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/AnalogDigitalFlagType.java

@@ -1,40 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by JSTOR and the President and Fellows of Harvard College
- *
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class defines enumerated types for the analog/digital
- *  flag of AESAudioMetadata. 
- *  Applications will not create or modify instances of this class, but will
- *  use one of the predefined AnalogDigitalFlagType instances.
- * 
- * @author Gary McGath
- *
- */
-public class AnalogDigitalFlagType extends EnumerationType {
-
-    /** Enumeration instance for analog data */
-    public static final AnalogDigitalFlagType ANALOG = 
-        new AnalogDigitalFlagType ("ANALOG");
-
-    /** Enumeration instance for physical digital data */
-    public static final AnalogDigitalFlagType PHYS_DIGITAL = 
-        new AnalogDigitalFlagType ("PHYS_DIGITAL");
-
-    /** Enumeration instance for FILE digital data */
-    public static final AnalogDigitalFlagType FILE_DIGITAL = 
-        new AnalogDigitalFlagType ("FILE_DIGITAL");
-
-    /** 
-     *  Applications will never create PropertyTypes directly.
-     **/
-    private AnalogDigitalFlagType (String value)
-    {
-        super (value);
-    }
-
-}

jhove/classes/edu/harvard/hul/ois/jhove/App.java

@@ -1,128 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-//import java.io.*;
-import java.util.*;
-
-/**
- *  The application class for JHOVE. One instance of this class is
- *  generated by the application.  Various utility and informational
- *  methods are contained here.
- */
-public class App
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /** Application build date. */
-    private Date _date;
-
-    /** Application name. */
-    private String _name;
-
-    /** Application release identifier. */
-    private String _release;
-
-    /** Application rights statement. */
-    private String _rights;
-
-    /** Application invocation syntax. */
-    private String _usage;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     *   Creates an App object.
-     *   @param name            Name of the application.
-     *   @param release         Release identifier.
-     *   @param date            Last modification date of the application code,
-     *                          in the form of an array of three numbers.
-     *                          <code>date[0]</code> is the year, 
-     *                          <code>date[1]</code> the month, and
-     *                          <code>date[2]</code> the day.
-     *   @param usage           String summarizing command line usage, to
-     *                          output when app name is typed with no
-     *                          arguments or flags.
-     *   @param rights            Copyright or other rights statement.
-     */
-    public App (String name, String release, int [] date, String usage,
-                String rights)
-    {
-        Calendar calendar = new GregorianCalendar ();
-        calendar.set (date[0], date[1]-1, date[2]);
-
-        _name    = name;
-        _release = release;
-        _date    = calendar.getTime ();
-        _usage   = usage;
-        _rights  = rights;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     *
-     * Accessor methods.
-     ******************************************************************/
-
-    /**
-     *  Returns application code creation date
-     */
-    public Date getDate ()
-    {
-        return _date;
-    }
-
-    /**
-     *  Returns the name of this application
-     */
-    public String getName ()
-    {
-        return _name;
-    }
-
-    /**
-     *  Returns the release identifier for this application.
-     */
-    public String getRelease ()
-    {
-        return _release;
-    }
-
-    /**
-     *  Returns the rights string.
-     */
-    public String getRights ()
-    {
-        return _rights;    
-    }
-    
-    /**
-     *  Returns the usage string, which should be output when the user
-     *  enters a command line with only the application name.
-     */
-    public String getUsage ()
-    {
-        return _usage;
-    }
-
-    /******************************************************************
-     * Serialization methods.
-     ******************************************************************/
-
-    /**
-     *  Outputs detailed information about the application,
-     *  including configuration, available modules and handlers,
-     *  etc.
-     */
-    public void show (OutputHandler handler)
-    {
-        handler.show (this);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/ByteArrayXMPSource.java

@@ -1,66 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- *
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-
-/**
- * Class for providing an InputSource to XMPHandler,
- * with a ByteArrayInputStream as the basis of the
- * InputSource.  This is suitable for a number of modules.
- *
- *  @author Gary McGath
- *
- */
-public class ByteArrayXMPSource extends XMPSource {
-
-    /* The underlying ByteArrayInputStream. */
-    ByteArrayInputStream _instrm;
-
-    /**
-     * Constructor based on ByteArrayInputStream. 
-     * 
-     * @param instrm   ByteArrayInputStream containing the XMP
-     */
-    public ByteArrayXMPSource (ByteArrayInputStream instrm)
-            throws IOException
-    {
-        super (new InputStreamReader
-               (new XMLWrapperStream (instrm)));
-        _instrm = instrm;
-        // Prepare for resetting.
-        instrm.mark (instrm.available ());
-    }
-
-
-    /**
-     * Constructor based on ByteArrayInputStream with encoding. 
-     * 
-     * @param instrm   ByteArrayInputStream containing the XMP
-     */
-    public ByteArrayXMPSource (ByteArrayInputStream instrm,
-                    String encoding)
-            throws IOException
-    {
-        super (new InputStreamReader
-               (new XMLWrapperStream (instrm), encoding));
-        _instrm = instrm;
-        // Prepare for resetting.
-        instrm.mark (instrm.available ());
-    }
-
-
-
-    /* (non-Javadoc)
-     * @see edu.harvard.hul.ois.jhove.XMPSource#resetReader()
-     */
-    protected void resetReader() {
-        _instrm.reset ();
-        _reader = new InputStreamReader (_instrm);
-    }
-
-}

jhove/classes/edu/harvard/hul/ois/jhove/Callback.java

@@ -1,25 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  An interface for supporting a general, simple callback function.
- */
-public interface Callback 
-{
-    /**
-     *  A generic callback function.  Any class which needs to support
-     *  callback can implement callback and pass a reference to itself
-     *  to the function that does the callback.
-     *
-     *  @param  selector  An indicator of the function to be performed.
-     *                    Interpretation is determined by the implementing class.
-     *  @param  parm      Whatever data may be appropriate to the callback.
-     *
-     *  @return          As specified by the implementing class.
-     */
-    public int callback (int selector, Object parm);
-}

jhove/classes/edu/harvard/hul/ois/jhove/Checksum.java

@@ -1,93 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class encapsulates the result of calculations which provide a greater
- *  or lesser degree of confirmation of the integrity of a digital
- *  object's content, including checksums, CRC's, message digests,
- *  etc.
- *
- *  @see ChecksumType
- *  @see Checksummer
- */
-public class Checksum
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    private ChecksumType _type;
-    private String _value;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     *  Creates a Checksum with a given value and type
-     */
-    public Checksum (String value, ChecksumType type)
-    {
-	_value = value;
-	_type  = type;
-    }
-
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     *
-     * Accessor methods.
-     ******************************************************************/
-
-    /** 
-     *  Returns this Checksum's type
-     */
-    public ChecksumType getType ()
-    {
-	return _type;
-    }
-
-    /** 
-     *  Returns this Checksum's value
-     */
-    public String getValue ()
-    {
-	return _value;
-    }
-
-    /******************************************************************
-     * Mutator methods.
-     ******************************************************************/
-
-    /**
-     *  Sets the type of this Checksum
-     */
-    public void setType (ChecksumType type)
-    {
-	_type = type;
-    }
-
-    /**
-     *  Sets the value of this Checksum
-     */
-    public void setValue (String value)
-    {
-	_value = value;
-    }
-
-    /******************************************************************
-     *  Put here as a convenience for checksum calculators
-     *****************************************************************/
-    /**
-     * Maps unsigned byte value (0 to 256) to signed byte value (-128 to 127).
-     */
-    public static byte unsignedByteToByte (int value)
-    {
-	return (byte) ((value < 127) ? value : value - 256);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/ChecksumInputStream.java

@@ -1,145 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003-2006 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.IOException;
-import java.io.*;
-
-/**
- * A ChecksumInputStream is a FilterInputStream with the added
- * functionality of calculating checksums as it goes.  
- * 
- * The idea of replacing this with java.util.zip.CheckedInputStream
- * looks very tempting, but we need the byte count, which
- * CheckedInputStream doesn't provide.
- * 
- * @author Gary McGath
- *
- */
-public class ChecksumInputStream extends FilterInputStream {
-
-    private InputStream subsumedStream;
-    private Checksummer _cksummer;
-    private long _nBytes;
-    
-    /**
-     *  Constructor.
-     * 
-     *  @param stream   Stream to be filtered
-     *  @param cksummer Object to calculate checksum on the bytes
-     *                  as they are read
-     */
-    public ChecksumInputStream(InputStream stream, Checksummer cksummer) {
-        super (stream);
-        subsumedStream = stream;
-        _cksummer = cksummer;
-        _nBytes = 0;
-    }
-
-    /**
-     *  Reads a byte from the subsumed stream, updating
-     *  the byte count and the checksums.
-     */
-    public int read() throws IOException {
-        int ch = subsumedStream.read ();
-        if (ch >= 0) {
-            _nBytes++;
-            if (_cksummer != null) {
-                _cksummer.update (ch);
-            }
-        }
-        return ch;
-    }
-
-    /**
-     * Reads some number of bytes from the input stream and
-     * stores them into the buffer array b. The number of
-     * bytes actually read is returned as an integer.
-     * 
-     * All bytes read are fed through the checksummer.
-     */
-    public int read(byte[] b) throws IOException 
-    {
-        int len = subsumedStream.read (b);
-        // Careful here -- don't want to add -1 bytes at EOF
-        if (len > 0) {
-	    if (_cksummer != null) {
-		_cksummer.update (b);
-	    }
-            _nBytes += len;
-        }
-        return len;
-    }
-    
-    /**
-     * Reads up to len bytes of data from the input stream 
-     * into an array of bytes. An attempt is made to read as 
-     * many as len bytes, but a smaller number may be read, 
-     * possibly zero. The number of bytes actually read is
-     * returned as an integer.
-     * 
-     * All bytes read are fed through the checksummer.
-     */
-    public int read(byte[] b, int off, int len) throws IOException 
-    {
-        len = subsumedStream.read (b, off, len);
-        // Careful here -- don't want to add -1 bytes at EOF
-        if (len > 0) {
-            if (_cksummer != null) {
-		_cksummer.update (b, off, len);
-            }
-            _nBytes += len;
-        }
-        return len;
-    }
-    
-    /**
-     *  Skips n bytes.
-     *  Reads them and feeds them through the checksummer.
-     */
-    public long skip (long n) throws IOException {
-        long nret = 0;
-        while (n > 0) {
-            // grab the data in reasonable buffer-sized chunks.
-            int bufsize = (int) (n > 8192 ? 8192 : n);
-            byte[] buf = new byte[bufsize];
-            int nread = read (buf);
-            if (nread <= 0) {
-                break;
-            }
-            nret += nread;
-            n -= nread;
-        }
-        return nret;
-    }
-    
-    /**
-     *  Closes the subsumed stream.
-     */
-    public void close () throws IOException
-    {
-        subsumedStream.close();
-    }
-    
-    /**
-     *  Returns the byte count to date on the stream.
-     *  This returns the number of bytes read.
-     *  Because of buffering, this is not a reliable
-     *  indicator of how many bytes have actually been processed.
-     */
-    public long getNBytes ()
-    {
-        return _nBytes;
-    }
-    
-    /**
-     *  Returns the Checksummer object.
-     */
-    public Checksummer getChecksummer ()
-    {
-        return _cksummer;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/ChecksumType.java

@@ -1,37 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class defines enumerated types for a Checksum on a content
- *  stream or file. 
- *  Applications will not create or modify ChecksumTypes, but will
- *  use one of the predefined ChecksumType instances 
- *  CRC32, MD5, or SHA1.
- *
- *  @see Checksum
- */
-public final class ChecksumType
-    extends EnumerationType
-{
-    /** 32-bit Cyclical Redundancy Checksum. */
-    public static final ChecksumType CRC32 = new ChecksumType ("CRC32");
-
-    /** 128-bit Message Digest 5. */
-    public static final ChecksumType MD5 = new ChecksumType ("MD5");
-
-    /** 160-bit Secure Hash Algorithm. */
-    public static final ChecksumType SHA1 = new ChecksumType ("SHA-1");
-
-    /** 
-     *  Applications will never create ChecksumTypes directly.
-     **/
-    private ChecksumType (String value)
-    {
-	super (value);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/Checksummer.java

@@ -1,193 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003-2006 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-import java.security.*;
-import java.util.zip.*;
-
-/**
- *  The Checksummer class encapsulates the calculation of the 
- *  CRC32, MD5, and SHA-1 checksums. 
- */
-public class Checksummer implements java.util.zip.Checksum
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /** Byte count. */
-    protected long _nByte;
-    /** CRC32 object. */
-    private CRC32 _crc32;
-    /** MD5 message digest. */
-    private MessageDigest _md5;
-    /** SHA-1 message digest. */
-    private MessageDigest _sha1;
-
-    /**
-     *  Creates a Checksummer, with instances of each of 
-     *  CRC32, MD5 MessageDigest, and SHA-1 MessageDigest.
-     *  If one or both of the MessageDigests aren't supported
-     *  on the current platform, they are left as null.
-     *
-     *  @see CRC32
-     *  @see MessageDigest
-     */
-    public Checksummer ()
-    {
-	reset ();
-    }
-    
-    /** Resets all checksums and the byte count to their
-     *  initial values.
-     */
-    public void reset ()
-    {
-        _nByte = 0;
-        _crc32 = new CRC32 ();
-        try {
-            _md5  = MessageDigest.getInstance ("MD5");
-            _sha1 = MessageDigest.getInstance ("SHA-1");
-        }
-        catch (NoSuchAlgorithmException e) {
-        }
-    }
-    
-    /** getValue is required by the Checksum interface, but
-     *  we can return only one of the three values.  We 
-     *  return the CRC32 value, since that's the one which
-     *  is guaranteed to be available.
-     */
-    public long getValue ()
-    {
-        return _crc32.getValue ();
-    }
-    
-    /**
-     *  Updates the checksum with the argument.
-     *  Called when a signed byte is available.
-     */
-    public void update (byte b)
-    {
-	_crc32.update (b);
-	if (_md5 != null) {
-	    _md5.update (b);
-	}
-	if (_sha1 != null) {
-       	    _sha1.update (b);
-	}
-    }
-
-    /**
-     *  Updates the checksum with the argument.
-     *  Called when an unsigned byte is available.
-     */
-    public void update (int b)
-    {
-	byte sb;
-	if (b > 127) {
-	    sb = (byte) (b - 256);
-	}
-	else {
-	    sb = (byte) b;
-	}
-	update (sb);
-    }
-    
-    /**
-     *  Updates the checksum with the argument.
-     *  Called when a byte array is available.
-     */
-    public void update (byte[] b)
-    {
-	_crc32.update (b);
-	if (_md5 != null) {
-	    _md5.update (b);
-	}
-	if (_sha1 != null) {
-	    _sha1.update (b);
-	}
-    }
-    
-    /**
-     *  Updates the checksum with the argument.
-     *  Called when a byte array is available.
-     */
-    public void update (byte[] b, int off, int len)
-    {
-	_crc32.update (b, off, len);
-	if (_md5 != null) {
-	    _md5.update (b, off, len);
-	}
-	if (_sha1 != null) {
-	    _sha1.update (b, off, len);
-	}
-    }
-
-    /**
-     *  Returns the value of the CRC32 as a hex string.
-     */
-    public String getCRC32 ()
-    {
-	return padLeadingZeroes 
-            (Long.toHexString (_crc32.getValue ()), 8);
-    }
-
-    /**
-     *  Returns the value of the MD5 digest as a hex string.
-     *  Returns null if the digest is not available.
-     */
-    public String getMD5 ()
-    {
-	String value = null;
-
-	if (_md5 != null) {
-	    StringBuffer buffer = new StringBuffer ();
-	    byte [] digest = _md5.digest ();
-	    for (int i=0; i<digest.length; i++) {
-		int un = (digest[i] >= 0) ? digest[i] : 256+digest[i];
-                buffer.append (padLeadingZeroes 
-                                (Integer.toHexString (un), 2));
-	    }
-	    value = buffer.toString ();
-	}
-
-	return value;
-    }
-
-    /**
-     *  Returns the value of the SHA-1 digest as a hex string.
-     *  Returns null if the digest is not available.
-     */
-    public String getSHA1 ()
-    {
-	String value = null;
-
-	if (_sha1 != null) {
-	    StringBuffer buffer = new StringBuffer ();
-	    byte [] digest = _sha1.digest ();
-	    for (int i=0; i<digest.length; i++) {
-		int un = (digest[i] >= 0) ? digest[i] : 256+digest[i];
-		buffer.append (padLeadingZeroes 
-                                (Integer.toHexString (un), 2));
-	    }
-	    value = buffer.toString ();
-	}
-
-	return value;
-    }
-    
-    /** Pad a hexadecimal (or other numeric) string out to
-     *  the specified length with leading zeroes. */
-    private String padLeadingZeroes (String str, int len)
-    {
-        // This is optimized for adding just one leading zero
-        // or none, which will be the usual case.
-        while (str.length () < len) {
-            str = "0" + str;
-        }
-        return str;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/ConfigHandler.java

@@ -1,395 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.IOException;
-import java.io.InputStream;
-import java.net.URL;
-import java.util.*;
-import org.xml.sax.*;
-
-/**
- *  SAX Parser for the configuration file.
- */
-public class ConfigHandler
-    extends org.xml.sax.helpers.DefaultHandler
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    private String _class;
-    protected StringBuffer _content;
-    private Map<String, String> _extension;
-
-    /** The schema name */
-    private final static String configSchemaName =
-        "jhoveConfig.xsd";
-    
-    /** The list of handlers.  Each element in the List is an
-     *  array of two Strings representing the class and the initialization
-     *  string. */
-    private List<String[]> _handler;
-
-    /** The list of handler parameters.  Each element in the List is
-     *  a List of Strings (which may be empty but not null) representing 
-     *  parameters to be passed to the module.  List elements are in
-     *  one-to-one correspondence with _handler.
-     */
-    protected List<List<String>> _handlerParams;
-    private String _init;
-    private List<String> _param;
-    private String _tempDir;
-    private String _mixVsn;
-    private String _encoding;
-    private String _logLevel;
-    private int _bufferSize;
-    private String _jhoveHome;
-    private int _sigBytes;
-    
-    protected boolean _isHandler;
-    
-    /* _isModule is protected rather than private so that subclasses
-     * can add elements to the module element. */
-    protected boolean _isModule;
-    
-    private boolean _isTempDir;
-    private boolean _isMixVsn;
-    private boolean _isEncoding;
-    private boolean _isBufferSize;
-    private boolean _isJhoveHome;
-    private boolean _isLogLevel;
-    private boolean _isSigBytes;
-
-    /** The list of modules.  Each element in the List is an
-     *  array of two Strings representing the class and the initialization
-     *  string. */
-    protected List<ModuleInfo> _module;
-    
-    /** The list of module parameters.  Each element in the List is
-     *  a List of Strings (which may be empty but not null) representing 
-     *  parameters to be passed to the module.  List elements are in
-     *  one-to-one correspondence with _module.
-     */
-    protected List<List<String>> _modParams;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Creates a ConfigHandler.
-     */
-    public ConfigHandler ()
-    {
-        _module  = new ArrayList<ModuleInfo> ();
-        _handler = new ArrayList<String[]> ();
-        _modParams = new ArrayList<List<String>> ();
-        _handlerParams = new ArrayList<List<String>> ();
-
-        _isModule  = false;
-        _isHandler = false;
-        _isTempDir = false;
-        _isEncoding = false;
-        _isBufferSize = false;
-        _isJhoveHome = false;
-        _isLogLevel = false;
-
-        _bufferSize = -1;
-        _encoding   = null;
-        _extension  = new Hashtable<String, String> ();
-        _tempDir    = null;
-        _mixVsn     = null;
-        _sigBytes   = 1024;
-        _logLevel = null;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     *
-     * Accessor methods.
-     ******************************************************************/
-
-    /**
-     *  Returns the List of Modules specified by the config file.
-     *  Each element of the List is a String[2] whose elements are
-     *  the module class name and initialization value.
-     *
-     *  @see Module
-     */
-    public List<ModuleInfo> getModule ()
-    {
-        return _module;
-    }
-    
-    /**
-     *  Returns the List of module parameters specified by the config file.
-     *  Each element of the List is a List (possibly empty) of Strings
-     *  whose elements are parameters to pass to the module.  The
-     *  values returned by <code>getModuleParams()</code> are in 
-     *  one-to-one correspondence with those return by <code>getModule()</code>.
-     */
-    public List<List<String>> getModuleParams ()
-    {
-        return _modParams;
-    }
-
-    /**
-     *  Returns the List of handler parameters specified by the config file.
-     *  Each element of the List is a List (possibly empty) of Strings
-     *  whose elements are parameters to pass to the output handler.  The
-     *  values returned by <code>getHandlerParams()</code> are in 
-     *  one-to-one correspondence with those return by <code>getHandler()</code>.
-     */
-    public List<List<String>> getHandlerParams ()
-    {
-        return _handlerParams;
-    }
-
-    /**
-     *  Returns the List of OutputHandlers specified by the config file.
-     *
-     *  @see OutputHandler
-     */
-    public List<String[]> getHandler ()
-    {
-        return _handler;
-    }
-
-    /**
-     *  Returns the temporary directory path specified by the config file,
-     *  with final path separator.
-     */
-    public String getTempDir ()
-    {
-        return _tempDir;
-    }
-    
-    /** Returns the MIX schema version specified by the config file.
-     *  Acceptable values are "0.2" and "1.0" and "2.0".
-     */
-    public String getMixVsn () 
-    {
-        return _mixVsn;
-    }
-    
-    /** Returns the number of bytes to examine when looking for an
-     *  indefinitely positioned signature, or checking the first
-     *  sigBytes bytes of a file in lieu of a signature.
-     */
-    public int getSigBytes ()
-    {
-        return _sigBytes;
-    }
-
-    /**
-     *  Returns the character encoding specified by the config file.
-     */
-    public String getEncoding ()
-    {
-        return _encoding;
-    }
-
-    /**
-     *           Returns the buffer size specified in the config file.
-     *
-     * @return   the buffer size, or -1 if none specified
-     */
-    public int getBufferSize ()
-    {
-	return _bufferSize;
-    }
-
-    /**
-     * Return an associative map of configuration extensions.
-     */
-    public Map<String, String> getExtensions ()
-    {
-        return _extension;
-    }
-
-    /**
-     *  Returns the path to the application's home directory,
-     *  with final path separator.
-     */
-    public String getJhoveHome ()
-    {
-        return _jhoveHome;
-    }
-    
-    /**
-     *  Returns the name of the desired log level.  This should be the
-     *  name of one of the predefined values of java.util.logging.Level,
-     *  e.g., "WARNING", "INFO", "ALL".  The default level is SEVERE. 
-     */
-    public String getLogLevel ()
-    {
-        return _logLevel;
-    }
-
-
-    /******************************************************************
-     * SAX parser methods.
-     ******************************************************************/
-
-    /** 
-     *  SAX parser callback method.
-     */
-    public void startElement (String namespaceURI, String localName,
-			      String rawName, Attributes atts)
-	throws SAXException
-    {
-        _content = new StringBuffer ();
-        
-        if (rawName.equals ("module")) {
-            _isModule  = true;
-            _init = null;
-            _param = new ArrayList<String> (1);
-            _class = null;
-        }
-        else if (rawName.equals ("outputHandler")) {
-            _isHandler = true;
-            _init = null;
-            _param = new ArrayList<String> (1);
-            _class = null;
-        }
-        else if (rawName.equals ("tempDirectory")) {
-            _isTempDir = true;
-        }
-        else if (rawName.equals ("mixVersion")) {
-            _isMixVsn = true;
-        }
-        else if (rawName.equals ("defaultEncoding")) {
-            _isEncoding = true;
-        }
-        else if (rawName.equals ("bufferSize")) {
-            _isBufferSize = true;
-        }
-        else if (rawName.equals ("jhoveHome")) {
-            _isJhoveHome = true;
-        }
-        else if (rawName.equals ("logLevel")) {
-            _isLogLevel = true;
-        }
-        else if (rawName.equals ("sigBytes")) {
-            _isSigBytes = true;
-        }
-    }
-
-    /** 
-     *  SAX parser callback method.
-     */
-    public void characters (char [] ch, int start, int length)
-	throws SAXException
-    {
-	_content.append (ch, start, length);
-    }
-
-    /** 
-     *  SAX parser callback method.
-     */
-    public void endElement (String namespaceURI, String localName,
-			    String rawName)
-	throws SAXException
-    {
-        if (_isModule) {
-            if (rawName.equals ("class")) {
-                _class = _content.toString ();
-        }
-        else if (rawName.equals ("init")) {
-            _init = _content.toString ();
-        }
-        else if (rawName.equals ("param")) {
-            _param.add (_content.toString ());
-        }
-	    else if (rawName.equals ("module")) {
-            ModuleInfo modInfo = new ModuleInfo( _class, _init);
-            _module.add (modInfo);
-            _modParams.add (_param);
-            _isModule = false;
-	    }
-	}
-	else if (_isHandler) {
-	    if (rawName.equals ("class")) {
-		_class = _content.toString ();
-	    }
-	    else if (rawName.equals ("init")) {
-		_init = _content.toString ();
-	    }
-            else if (rawName.equals ("param")) {
-                _param.add (_content.toString ());
-            }
-	    else if (rawName.equals ("outputHandler")) {
-		String [] tuple = { _class, _init };
-		_handler.add (tuple);
-                _handlerParams.add (_param);
-		_isHandler = false;
-	    }
-	}
-        else if (_isTempDir) {
-            _tempDir = _content.toString ().trim ();
-            _isTempDir = false;
-        }
-        else if (_isMixVsn) {
-            _mixVsn =  _content.toString ().trim ();
-            _isMixVsn = false;
-        }
-        else if (_isSigBytes) {
-            try {
-                _sigBytes = Integer.parseInt (_content.toString ().trim ());
-            }
-            catch (NumberFormatException e) {}
-            _isSigBytes = false;
-        }
-        else if (_isEncoding) {
-            _encoding = _content.toString ().trim ();
-            _isEncoding = false;
-        }
-        else if (_isJhoveHome) {
-            _jhoveHome = _content.toString ().trim ();
-            _isJhoveHome = false;
-        }
-        else if (_isLogLevel) {
-            _logLevel = _content.toString ().trim ();
-            _isLogLevel = false;
-        }
-	else if (_isBufferSize) {
-	    try {
-		_bufferSize = Integer.parseInt (_content.toString ().trim ());
-	    }
-	    catch (NumberFormatException e) {
-		/* Just ignore a malformed number */
-	    }
-	    _isBufferSize = false;
-	}
-	else if (!rawName.equals ("jhoveConfig")) {
-	    _extension.put (rawName, _content.toString ().trim ());
-	}
-    }
-    
-    /** EntityResolver designed to locate the config schema. It tries to find it
-     *  as a local resource.
-     *  
-     *  It appears that not all SAX implementations will actually call this
-     *  function for schema resolution, so this isn't a guarantee that the
-     *  schema in the config file won't be called directly. But hopefully
-     *  it will cut down on the burden on the server with the official
-     *  schema copy.
-     */
-    public InputSource resolveEntity (String publicId, String systemId)
-                    throws SAXException, IOException {
-        if (systemId.endsWith (configSchemaName)) {
-            try {
-                URL resURL = this.getClass().getResource("jhoveConfig.xsd");
-                InputStream strm = resURL.openStream ();
-                return new InputSource (strm);
-            }
-            catch (Exception e) {}
-        }
-        // If we couldn't get the local resource, use default location methods
-        return super.resolveEntity (publicId, systemId);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/ConfigWriter.java

@@ -1,212 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- *
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-import java.util.*;
-import javax.swing.*;
-
-import edu.harvard.hul.ois.jhove.viewer.ConfigWindow;
-
-/**
- * 
- * Class to write out configuration information to the configuration file.
- * To minimize the chance of getting into a bad state, it writes to a
- * temporary file, then replaces the old config file with that file,
- * rather than directly overwriting the existing file.
- * 
- * @author Gary McGath
- *
- */
-public class ConfigWriter {
-
-    
-    private PrintWriter _confOut;
-    private File _tempFile;
-    private File _confFile;
-    ConfigWindow _parent;
-
-    /**
-     *  Constructor.
-     *  Creates a temporary file for writing and creates an OutputStreamWriter
-     *  to write to it.  If there is already a file located by
-     *  <code>file</code>, it will not be replaced or overwritten
-     *  until <code>writeFile</code> has successfully written out
-     *  the temporary file.
-     * 
-     *  @param  file    Location of the configuration file
-     * 
-     *  @param  parent  The ConfigWindow which invoked this instance.
-     *                  May be null if invoked to write a default config file.
-     */
-    public ConfigWriter (File file, ConfigWindow parent) throws IOException
-    {
-        _confFile = file;
-        _parent = parent;
-        // Set up a temporary file to write to. 
-        String path = file.getParent();
-        file.getParentFile().mkdirs();        // Make sure the directory exists
-        _tempFile = File.createTempFile ("jho", ".conf", new File (path));
-        //_tempFile.createNewFile();   
-        FileOutputStream ostrm = new FileOutputStream (_tempFile);
-        OutputStreamWriter osw = new OutputStreamWriter (ostrm, "UTF-8");
-        _confOut = new PrintWriter (osw);
-    }
-    
-
-    /**
-     *   Writes out the content of the file to the temporary file,
-     *   then deletes the existing configuration file (as specified 
-     *   by the constructor parameter) and renames the temporary file 
-     *   to the configuration file.
-     * 
-     *   If the temporary file can't be written, or the configuration
-     *   file can't be replaced, a warning dialog is put up and the
-     *   configuration file remains unchanged.
-     */
-    public void writeFile (List<ModuleInfo> modules,
-            List<String[]> handlers,
-            File homeDir,
-            File tempDir,
-            String encoding,
-            int bufferSize) throws IOException
-    {
-        writeHead ();
-        
-        // Write the home and temp directories.  Home must always be valid.
-        _confOut.println (" <jhoveHome>" + 
-                    encodeContent (homeDir.getPath ()) + 
-                    "</jhoveHome>");
-
-        // Write out the encoding
-        if (encoding != null && encoding.length() > 0) {
-            _confOut.println (" <defaultEncoding>" +
-                    encodeContent (encoding) + "</defaultEncoding>");
-        }
-        
-
-        if (tempDir != null) {
-            _confOut.println (" <tempDirectory>" + 
-                    encodeContent (tempDir.getPath ()) + 
-                    "</tempDirectory>");
-        }
-        
-        // Write the buffer size if not default
-        if (bufferSize > 0) {
-            _confOut.println (" <bufferSize>" + bufferSize + 
-                    "</bufferSize>");
-        }
-        
-        // Write out the modules
-        ListIterator<ModuleInfo> iter = modules.listIterator ();
-        while (iter.hasNext ()) {
-            ModuleInfo minfo = iter.next ();
-            // The class must be non-null, but init may be null.
-            // If the class is empty, it's a user error (probably
-            // clicked "Add" and then lost track of it).  Don't
-            // write it out.
-            if (!"".equals (minfo.clas)) {
-                _confOut.println (" <module>");
-                _confOut.println ("   <class>" + encodeContent (minfo.clas) +
-                         "</class>");
-                if (minfo.init != null && minfo.init.length () > 0) {
-                    _confOut.println ("   <init>" + encodeContent (minfo.init) +
-                         "</init>");
-                }
-                /** tuple[2] and beyond are parameters */
-                if (minfo.params != null) {
-                    for (int i = 0; i < minfo.params.length; i++) {
-                        _confOut.println ("   <param>" + encodeContent(minfo.params[i]) +
-                             "</param>");
-                    }
-                }
-                _confOut.println (" </module>");
-            }
-        }
-        
-        // Write out the handlers
-        ListIterator<String[]> hiter = handlers.listIterator ();
-        while (hiter.hasNext ()) {
-            String handler = hiter.next ()[0];
-            if (handler.length() > 0) {          // Don't write out blank handler names
-                _confOut.println (" <outputHandler>");
-                _confOut.println ("   <class>" + encodeContent (handler) +
-                         "</class>");
-                _confOut.println (" </outputHandler>");
-            }
-        }
-
-        writeTail ();
-        _confOut.close ();
-        
-        // Replace the old file with the new.
-        if (_confFile.exists () && !_confFile.delete ()) {
-            if (_parent != null) {
-                JOptionPane.showMessageDialog(_parent, 
-                        "Can't replace old config file", 
-                        "Error", 
-                        JOptionPane.ERROR_MESSAGE);
-            }
-            _tempFile.delete ();
-        }
-        else {
-            _tempFile.renameTo (_confFile);
-        }
-    }
-    
-    /* Write the fixed lines which begin the config file */
-    private void writeHead () throws IOException
-    {
-        _confOut.println("<?xml version=\"1.0\" encoding=\"UTF-8\"?>");
-        _confOut.println("<jhoveConfig version=\"1.0\"");
-        _confOut.println("             xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"");
-        _confOut.println("             xmlns=\"http://hul.harvard.edu/ois/xml/ns/jhove/jhoveConfig\"");
-
-        // Note that the open quote of this line isn't closed till the next line; that's intentional.
-        _confOut.println("xsi:schemaLocation=\"http://hul.harvard.edu/ois/xml/ns/jhove/jhoveConfig");
-
-        _confOut.println("             http://hul.harvard.edu/ois/xml/xsd/jhove/jhoveConfig.xsd\">");
-    }
-    
-    /* Write out the fixed end of the config file */
-    private void writeTail () throws IOException
-    {
-        _confOut.println("</jhoveConfig>");
-    }
-    
-    
-        /**
-     *   Encodes a content String in XML-clean form, converting characters
-     *   to entities as necessary.  The null string will be
-     *   converted to an empty string.
-     */
-    private static String encodeContent (String content)
-    {
-        if (content == null) {
-            content = "";
-        }
-        StringBuffer buffer = new StringBuffer (content);
-
-        int n = 0;
-        while ((n = buffer.indexOf ("&", n)) > -1) {
-            buffer.insert (n+1, "amp;");
-            n +=5;
-        }
-        n = 0;
-        while ((n = buffer.indexOf ("<", n)) > -1) {
-            buffer.replace (n, n+1, "&lt;");
-            n += 4;
-        }
-        n = 0;
-        while ((n = buffer.indexOf (">", n)) > -1) {
-            buffer.replace (n, n+1, "&gt;");
-            n += 4;
-        }
-
-        return buffer.toString ();
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/CountedInputStream.java

@@ -1,114 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-
-/**
- * A FilterInputStream which passes only a specified
- * number of bytes, then returns an EOF condition.
- *
- * @author Gary McGath
- *
- */
-public class CountedInputStream extends FilterInputStream {
-
-    private int bytesLeft;
-    
-    /**
-     * @param instrm       The InputStream being counted
-     * @param count        The number of bytes to be allowed
-     */
-    public CountedInputStream(InputStream instrm, int count) {
-        super(instrm);
-        bytesLeft = count;
-    }
-
-
-    /** Reads a single byte from the stream and decrements
-     *  the count of remaining bytes.  If the count
-     *  is exhausted, returns -1 to signify end of file. */
-    public int read() throws IOException {
-        if (bytesLeft <= 0) {
-            return -1;
-        }
-        else {
-            int ch = super.read ();
-            if (ch != -1) {
-                --bytesLeft;
-            }
-            return ch;
-        }
-    }
-
-
-    /**
-     * Reads some number of bytes from the input stream and
-     * stores them into the buffer array b. The number of
-     * bytes actually read is returned as an integer.
-     * 
-     * The number of bytes read will not exceed the number
-     * of bytes remaining in the count.  The count is
-     * decremented by the number of bytes actually read.
-     */
-    public int read(byte[] b) throws IOException 
-    {
-        int len = b.length;
-        int bytesRead;
-        if (len <= bytesLeft) {
-            // Limit doesn't affect us, do normal read
-            bytesRead = super.read (b);
-        }
-        else {
-            // Limit the read to bytesLeft
-            bytesRead = super.read (b, 0, bytesLeft);
-        }
-        bytesLeft -= bytesRead;
-        return bytesRead;
-    }
-
-
-    /**
-     * Reads up to len bytes of data from the input stream 
-     * into an array of bytes. An attempt is made to read as 
-     * many as len bytes, but a smaller number may be read, 
-     * possibly zero. The number of bytes actually read is
-     * returned as an integer.
-     * 
-     * The number of bytes read will not exceed the number
-     * of bytes remaining in the count.  The count is
-     * decremented by the number of bytes actually read.
-     */
-    public int read(byte[] b, int off, int len) throws IOException 
-    {
-        int bytesRead;
-        if (len <= bytesLeft) {
-            // Limit doesn't affect us, do normal read
-            bytesRead = super.read (b, off, len);
-        }
-        else {
-            bytesRead = super.read (b, off, bytesLeft);
-        }
-        bytesLeft -= bytesRead;
-        return bytesRead;
-    }
-
-    /**
-     *  Skips n bytes.
-     *  Decrements the count by the number of bytes
-     *  actually skipped.
-     */
-    public long skip (long n) throws IOException {
-        long bytesRead = super.skip (n);
-        if (bytesLeft < bytesRead) {
-            bytesLeft = 0;
-        }
-        else {
-            bytesLeft -= bytesRead;
-        }
-        return bytesRead;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/DefaultConfigurationBuilder.java

@@ -1,128 +0,0 @@
-package edu.harvard.hul.ois.jhove;
-
-import java.io.File;
-import java.io.IOException;
-import java.lang.reflect.Field;
-import java.util.ArrayList;
-import java.util.List;
-
-import edu.harvard.hul.ois.jhove.module.*;
-
-/** This class creates a default configuration if no valid configuration file
- *  is found. */
-public class DefaultConfigurationBuilder {
-
-    private final static String FILE_SEP = System.getProperty ("file.separator");
-    private final static String HOME_DIR = System.getProperty ("user.home");
-    private final static String JHOVE_DIR = HOME_DIR + FILE_SEP + "jhove";
-    private final static String TEMP_DIR = System.getProperty("java.io.tmpdir");
-    private final static String DEFAULT_ENCODING = "utf-8";
-    private final static int DEFAULT_BUFFER_SIZE = 131072;
-    
-    private File configFile;
-    
-    
-    /** Constructor. A location for the file may be specified or
-     *  left null, */
-    public DefaultConfigurationBuilder (File location) {
-        if (location != null) {
-            configFile = location;
-        }
-        else {
-            configFile = new File (JHOVE_DIR +
-                      FILE_SEP + "conf" +
-                      FILE_SEP + "jhove.conf");
-        }
-    }
-    
-    
-    public void writeDefaultConfigFile () throws IOException {
-//        if (TEMP_DEBUG) {
-//            String configFileName = "null";
-//            if (configFile != null) 
-//                configFileName = configFile.getAbsolutePath();
-//            System.out.println ("writeDefaultConfigFile: path is " + configFileName);
-//        }
-        ConfigWriter cw = new ConfigWriter (configFile, null);
-        List<ModuleInfo> modules = getModules();
-        // TextHandler, XmlHandler, and AuditHandler are loaded by
-        // default, so there are no handlers to put in the config file.
-        List<String[]> handlers = new ArrayList<String[]> ();
-        File homeDir = new File (JHOVE_DIR);
-        File tempDir = new File (TEMP_DIR);
-        try {
-            cw.writeFile(modules, handlers, homeDir, tempDir, 
-                DEFAULT_ENCODING, DEFAULT_BUFFER_SIZE);
-        }
-        catch (IOException e) {
-//            if (TEMP_DEBUG)
-//                e.printStackTrace();
-            throw e;
-        }
-    }
-
-//    public void writeDefaultConfigFile () throws IOException {
-//        ConfigWriter cw = new ConfigWriter (configFile, null);
-//        List<ConfigWriter.ModuleInfo> modules = getModules();
-//        // TextHandler, XmlHandler, and AuditHandler are loaded by
-//        // default, so there are no handlers to put in the config file.
-//        List<String> handlers = new ArrayList<String> ();
-//        File homeDir = new File (JHOVE_DIR);
-//        File tempDir = new File (TEMP_DIR);
-//        cw.writeFile(modules, handlers, homeDir, tempDir, 
-//                DEFAULT_ENCODING, DEFAULT_BUFFER_SIZE);
-//    }
-
-    public File getConfigFile () {
-        return configFile;
-    }
-    
-    
-    protected List<ModuleInfo> getModules () {
-        int nModules = builtInModules.length;
-        ArrayList<ModuleInfo> mods = new ArrayList<ModuleInfo> (nModules);
-        try {
-            for (int i = 0; i < nModules; i++) {
-                Class<?> cls = builtInModules[i];
-                ModuleInfo minfo = new ModuleInfo(cls.getName());
-                minfo.init = null;       // Never used at present
-                minfo.params = getDefaultConfigParameters (cls);
-                mods.add(minfo);
-            }
-        }
-        catch (Exception e) {}
-        return mods;
-    }
-    
-    
-    /** We can't have a static method in an Interface and override it, so we
-     *  have to get a bit ugly to fake static inheritance. The advantage of
-     *  this is that only the Modules with non-null default config file
-     *  parameters have to implement the defaultConfigParams static field. */
-    protected String[] getDefaultConfigParameters (Class<?> c) {
-        try {
-            Field dcpField = c.getField("defaultConfigParams");
-            return (String[]) dcpField.get(null);
-        }
-        catch (Exception e) {
-            return new String [] {};
-        }
-    }
-    
-    /** The array of build-in modules. If a module is added to or removed from
-     *  the build, this array must be changed. The Bytestream module is
-     *  loaded by default and so is not listed here. */
-    private Class<?>[] builtInModules = {
-        AiffModule.class,
-        AsciiModule.class,
-        GifModule.class,
-        HtmlModule.class,
-        Jpeg2000Module.class,
-        JpegModule.class,
-        PdfModule.class,
-        TiffModule.class,
-        Utf8Module.class,
-        WaveModule.class,
-        XmlModule.class
-    };
-}

jhove/classes/edu/harvard/hul/ois/jhove/Document.java

@@ -1,194 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.util.*;
-
-/** 
- *  This class encapsulates information about format specification documents.
- *
- *  @see  DocumentType
- */
-public class Document
-{
-    private List _author;
-    private String _date;
-    private String _edition;
-    private String _enum;
-    private List _identifier;
-    private String _note;
-    private String _pages;
-    private List _publisher;
-    private String _title;
-    private DocumentType _type;
-
-    /**
-     *  Creates a Document with a given title and one of the predefined
-     *  DocumentTypes.
-     */
-    public Document (String title, DocumentType type)
-    {
-    _title = title;
-    _type  = type;
-
-    _author     = new ArrayList ();
-    _identifier = new ArrayList ();
-    _publisher  = new ArrayList ();
-    }
-
-    /**
-     *  Returns a List of Agents, each representing an author of this
-     *  Document.
-     *  Returns an empty list if no authors have been listed.
-     *
-     *  @see Agent
-     */
-    public List getAuthor ()
-    {
-    return _author;
-    }
-    
-    /**
-     *  Returns the date of this Document
-     */
-    public String getDate ()
-    {
-    return _date;
-    }
-
-    /**
-     *   Returns informaton on the edition of this Document
-     */
-    public String getEdition ()
-    {
-    return _edition;
-    }
-
-    /**
-     *  Returns the enumeration (e.g., serial volume and number)
-     *  of this Document
-     */
-    public String getEnumeration ()
-    {
-    return _enum;
-    }
-
-    /**
-     *  Returns the list of formal Identifiers for this Document.
-     *  If no Identifiers are given, returns an empty list.
-     */
-    public List getIdentifier ()
-    {
-    return _identifier;
-    }
-
-    /**
-     *  Returns the note associated with this Document
-     */
-    public String getNote ()
-    {
-    return _note;
-    }
-
-    /**
-     *  Returns pagination information for this Document
-     */
-    public String getPages ()
-    {
-    return _pages;
-    }
-
-    /**
-     *  Returns a List of Agents, each representing a publisher of this
-     *  Document.  If no publishers are listed, returns an empty list.
-     */
-    public List getPublisher ()
-    {
-    return _publisher;
-    }
-
-    /**
-     *  Returns the title of this Document 
-     */
-    public String getTitle ()
-    {
-    return _title;
-    }
-
-    /**
-     *  Returns one of the predefined DocumentTypes as the type of
-     *  this Document
-     */
-    public DocumentType getType ()
-    {
-    return _type;
-    }
-
-    /**
-     *  Adds an author to the list of authors
-     */
-    public void setAuthor (Agent author)
-    {
-    _author.add (author);
-    }
-
-    /**
-     *  Sets the date of this Document
-     */
-    public void setDate (String date)
-    {
-    _date = date;
-    }
-
-    /**
-     *  Sets edition information for this Document
-     */
-    public void setEdition (String edition)
-    {
-    _edition = edition;
-    }
-
-    /**
-     *  Sets enumeration information (e.g., serial volume and number)
-     *  for this Document
-     */
-    public void setEnumeration (String enm)
-    {
-    _enum = enm;
-    }
-
-    /**
-     *  Adds an Identifier to the list of identifiers
-     */
-    public void setIdentifier (Identifier identifier)
-    {
-    _identifier.add (identifier);
-    }
-
-    /**
-     *  Sets a note giving additional information about this Document
-     */
-    public void setNote (String note)
-    {
-    _note = note;
-    }
-
-    /**
-     *  Sets pagination information for this Document
-     */
-    public void setPages (String pages)
-    {
-    _pages = pages;
-    }
-
-    /**
-     *  Adds a publisher to the list of publishers
-     */
-    public void setPublisher (Agent publisher)
-    {
-    _publisher.add (publisher);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/DocumentType.java

@@ -1,61 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class defines enumerated types for a Document.
- *  Applications will not create or modify DocumentTypes, but will
- *  use one of the predefined DocumentType instances 
- *  ARTICLE, BOOK, REPORT, RFC, STANDARD, WEB, or OTHER.
- *
- *  @see Document
- *  
- */
-public final class DocumentType
-    extends EnumerationType
-{
-    /**
-     *  Document type for a printed article.
-     */
-    public static final DocumentType ARTICLE = new DocumentType ("Article");
-    /**
-     *  Document type for an book.
-     */
-    public static final DocumentType BOOK = new DocumentType ("Book");
-    /**
-     *  Document type for a report.
-     */
-    public static final DocumentType REPORT = new DocumentType ("Report");
-    /**
-     *  Document type for an IETF Request for Comment.
-     */
-    public static final DocumentType RFC = new DocumentType ("RFC");
-    /**
-     *  Document type for a standards body publication.
-     */
-    public static final DocumentType STANDARD = new DocumentType ("Standard");
-    /**
-     *  Document type for a Web page.
-     */
-    public static final DocumentType WEB = new DocumentType ("Web");
-    /**
-     *  Document type that doesn't fit the other categories.
-     */
-    public static final DocumentType OTHER = new DocumentType ("Other");
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Applications will never create DocumentTypes directly.
-     **/
-    private DocumentType (String value)
-    {
-	super (value);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/Dump.java

@@ -1,134 +0,0 @@
-/**********************************************************************
- * JHOVE - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-
-/**
- * Common methods for dump utilities.
- */
-public class Dump
-{
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-    public Dump ()
-    {
-    }
-
-    /******************************************************************
-     * PUBLIC CLASS METHODS.
-     ******************************************************************/
-
-    /**
-     * Return leading characters to pad out the byte offset to field width.
-     * @param os Byte offset
-     * @param width Field width
-     * @return String of leading zeros 
-     */
-    protected static String leading (int os, int width)
-    {
-	return leading (os, width, '0');
-    }
-
-    /**
-     * Return leading characters to pad out the byte offset to field width.
-     * @param os Byte offset
-     * @param width Field width
-     * @return String of leading zeros 
-     */
-    protected static String leading (long os, int width)
-    {
-	return leading (os, width, '0');
-    }
-
-    /**
-     * Return leading characters to pad out the byte offset to field width.
-     * @param os    Byte offset
-     * @param width Field width
-     * @param pad   Padding character
-     * @return String of leading characters 
-     */
-    protected static String leading (int os, int width, char pad)
-    {
-	return leading ((long) os, width, pad);
-    }
-
-    /**
-     * Return leading characters to pad out the byte offset to field width.
-     * @param os    Byte offset
-     * @param width Field width
-     * @param pad   Padding character
-     * @return String of leading characters 
-     */
-    protected static String leading (long os, int width, char pad)
-    {
-	String ss = Long.toString (os);
-	StringBuffer buffer = new StringBuffer ();
-	for (int j=0; j<width-ss.length (); j++) {
-	    buffer.append (pad);
-	}
-	return buffer.toString ();
-    }
-
-    /**
-     * Return leading characters to pad out the string to field width.
-     * @param s     String
-     * @param width Field width
-     * @return String of leading characters 
-     */
-    protected static String leading (String s, int width)
-    {
-	return leading (s, width, '0');
-    }
-
-    /**
-     * Return leading characters to pad out the string to field width.
-     * @param s     String
-     * @param width Field width
-     * @param pad   Padding character
-     * @return String of leading characters 
-     */
-    protected static String leading (String s, int width, char pad)
-    {
-	StringBuffer buffer = new StringBuffer ();
-	for (int j=0; j<width-s.length (); j++) {
-	    buffer.append (pad);
-	}
-	return buffer.toString ();
-    }
-
-    /**
-     * Read and display a sequence of characters.
-     * @param stream Data input stream
-     * @param length Number of characters
-     * @return Character string
-     */
-    protected static String readChars (DataInputStream stream, int length)
-	throws IOException
-    {
-	byte [] buffer = new byte [length];
-	for (int i=0; i<length; i++) {
-	    buffer[i] = stream.readByte ();
-	}
-	return new String (buffer);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/EnumerationType.java

@@ -1,70 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- * Enumerated data type.  To create an emumeration, define a subclass
- * of EnumerationType with a private constructor, and define as
- * many <code>public final static</code> instances of the subclass,
- * within the subclass definition, as there are enumeration cases.
- * No other instances of an EnumerationType should ever be created,
- * and the only operations which should ever be performed on an
- * EnumerationType are assignment and equality testing.
- * 
- */
-public abstract class EnumerationType
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /** Enumeration value. */
-    private String _value;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     * Instantiate an <tt>EnumerationType</tt> object.
-     * @param value Enumeration value
-     */
-    protected EnumerationType (String value)
-    {
-    _value = value;
-    }
-
-    /**
-     *  Private no-argument constructor to close off the default
-     *  constructor.
-     */
-    private EnumerationType ()
-    {
-    }
-     
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     ******************************************************************/
-
-    /**
-     * Type equality test.
-     * @param enm Enumerated type
-     * @return True, if equal
-     */
-    public boolean equals (EnumerationType enm)
-    {
-    return this == enm;
-    }
-
-    /**
-     * Return enumeration value.
-     * @return Value
-     */
-    public String toString ()
-    {
-    return _value;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/ErrorMessage.java

@@ -1,58 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class encapsulates an error message from a Module, representing
- *  a problem in the content being analyzed. 
- */
-public class ErrorMessage
-    extends Message
-{
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Create an ErrorMessage.
-     *  @param  message   Human-readable string describing the problem.
-     */
-    public ErrorMessage (String message)
-    {
-	super (message);
-    }
-
-    /** 
-     *  Create an ErrorMessage.
-     *  @param  message   Human-readable string describing the problem.
-     *  @param  offset    The offset in the file at which the problem
-     *                    was detected.
-     */
-    public ErrorMessage (String message, long offset)
-    {
-	super (message, offset);
-    }
-    /** 
-     *  Create an ErrorMessage.
-     *  @param  message   Human-readable string describing the problem.
-     */
-    public ErrorMessage (String message, String subMessage)
-    {
-        super (message, subMessage);
-    }
-
-    /** 
-     *  Create an ErrorMessage.
-     *  @param  message   Human-readable string describing the problem.
-     *  @param  subMessage Human-readable additional information.
-     *  @param  offset    The offset in the file at which the problem
-     *                    was detected.
-     */
-    public ErrorMessage (String message, String subMessage, long offset)
-    {
-        super (message, subMessage, offset);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/ExternalSignature.java

@@ -1,60 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003-4 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class encapsulates information about external format signatures.
- *   The value of a Signature may be either a String or a byte array
- *   (stored as an int array to avoid signed byte problems).
- */
-public class ExternalSignature
-    extends Signature
-{
-    /**
-     *  Creates an ExternalSignature given a string value, a type,
-     *  and a use requirement.  
-     */
-    public ExternalSignature (String value, SignatureType type,
-			      SignatureUseType use)
-    {
-	super (value, type, use);
-    }
-
-    /**
-     *  Creates an ExternalSignature given a byte array, a type,
-     *  and a use requirement.
-     */
-    public ExternalSignature (int[] value, SignatureType type,
-			      SignatureUseType use)
-    {
-	super (value, type, use);
-    }
-
-    /**
-     *  Creates an ExternalSignature given a string value, a type,
-     *  a use requirement, and a note.  
-     */
-    public ExternalSignature (String value, SignatureType type,
-                  SignatureUseType use,
-                  String note)
-    {
-        super (value, type, use, note);
-    }
-
-
-    /**
-     *  Creates an ExternalSignature given a byte array, a type,
-     *  a use requirement, and a note.
-     */
-    public ExternalSignature (int[] value, SignatureType type,
-                  SignatureUseType use,
-                  String note)
-    {
-        super (value, type, use, note);
-    }
-
-
-}

jhove/classes/edu/harvard/hul/ois/jhove/HandlerBase.java

@@ -1,812 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-import java.text.*;
-import java.util.*;
-import java.util.logging.*;
-
-/**
- *  Abstract base class for Jhove output handlers.
- *  Output handlers should normally subclass HandlerBase.
- */
-public abstract class HandlerBase
-    implements OutputHandler
-{
-    /******************************************************************
-     * PUBLIC CLASS FIELDS.
-     ******************************************************************/
-
-    /**
-     *  A DateFormat for representing a Date in yyyy-MM-dd 
-     *  (e.g., 2003-07-31) format.
-     */
-    public static SynchronizedDateFormat date =
-              new SynchronizedDateFormat ("yyyy-MM-dd");
-    
-    /**
-     *  A DateFormat for representing a Date in yyyy-MM-dd HH:mm:ss z
-     *  (e.g., 2003-07-31 15:31:12 EDT) format.
-     */
-    public static SynchronizedDateFormat dateTime =
-              new SynchronizedDateFormat ("yyyy-MM-dd HH:mm:ss z");
-
-    /**
-     *  A DateFormat for representing a Date in ISO 8601
-     *  (e.g., 2003-07-31T15:31:12-0400) format.
-     *  We subclass SimpleDateFormat to make it thread-safe.
-     */
-    public static SynchronizedDateFormat iso8601 =
-              new SynchronizedDateFormat ("yyyy-MM-dd'T'HH:mm:ssZ");
-
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /**  The application object */
-    protected App _app;
-    /**  The Jhove engine */
-    protected JhoveBase _base;
-    /**  Handler last modification date */
-    protected Date _date;
-    /**  Character encoding for writer */
-    protected String _encoding;
-    /** Initialization value. */
-    protected String _init;
-    /** List of default parameters. */
-    protected List<String> _defaultParams;
-    /**  JHOVE engine. */
-    protected JhoveBase _je;
-    /**  Indentation level */
-    protected int _level;
-    /**  Handler name */
-    protected String _name;
-    /**  Handler note */
-    protected String _note;
-    /**  Handler release description. */
-    protected String _release;
-    /** Handler-specific parameter. */
-    protected String _param;
-    /**  Copyright notice */
-    protected String _rights;
-    /**  Handler specification document list */
-    protected List<Document> _specification;
-    /**  Handler vendor */
-    protected Agent _vendor;
-    /**  Writer for doing output */
-    protected PrintWriter _writer;
-    /** Logger for a handler class. */
-    protected Logger _logger;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     *   Constructors of all subclasses of HandlerBase should call
-     *   this as a <code>super</code> constructor.
-     *
-     *   @param name            Name of the handler
-     *   @param release         Release identifier
-     *   @param date            Last modification date of the handler code,
-     *                          in the form of an array of three numbers.
-     *                          <code>date[0]</code> is the year, 
-     *                          <code>date[1]</code> the month, and
-     *                          <code>date[2]</code> the day.
-     *   @param note            Additional information about the handler
-     *                          (may be null)
-     *   @param rights          Copyright notice for the handler
-     */
-    protected HandlerBase (String name, String release, int [] date,
-                           String note, String rights)
-    {
-        // Though we're actually in the jhove package, all the related
-        // action logically belongs in the handler package, so we name
-        // this logger accordingly.
-        _logger = Logger.getLogger ("edu.harvard.hul.ois.jhove.handler");
-        _logger.info ("Initializing " + name);
-        _name    = name;
-        _release = release;
-	_encoding = "UTF-8";
-
-        Calendar calendar = new GregorianCalendar ();
-        calendar.set (date[0], date[1]-1, date[2]);
-        _date = calendar.getTime ();
-
-        _note   = note;
-        _rights = rights;
-        _specification = new ArrayList<Document> ();
-
-        _level = -1;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     *
-     * Initialization methods.
-     ******************************************************************/
-
-    /**
-     * Reset the handler. This needs to be called before each invocation.
-     */
-    public void reset () {
-        _level = -1;
-    }
-    
-    /**
-     * Set a a List of default parameters for the module.
-     * 
-     * @param   params     A List whose elements are Strings.
-     *                     May be empty.
-     */
-    public void setDefaultParams (List<String> params)
-    {
-        _defaultParams = params;
-    }
-
-    /**
-     *  Applies the default parameters.
-     *  Calling this clears any prior parameters.
-     */
-    public void applyDefaultParams ()
-        throws Exception
-    {
-        resetParams ();
-        Iterator<String> iter = _defaultParams.iterator ();
-        while (iter.hasNext ()) {
-            String parm =  iter.next ();
-            param (parm);
-        }
-    }
-
-    /** Reset parameter settings.
-     *  Returns to a default state without any parameters.
-     *  The default method clears the saved parameter.
-     */
-    public void resetParams ()
-        throws Exception
-    {
-        _param = null;
-    }
-
-
-    /**
-     * Per-instantiation initialization.
-     * The default method does nothing.
-     */
-    public void init (String init)
-        throws Exception
-    {
-	_init = init;
-    }
-
-    /**
-     * Per-action initialization.
-     * The default method does nothing.
-     */
-    public void param (String param)
-        throws Exception
-    {
-	_param = param;
-    }
-
-    /******************************************************************
-     * Accessor methods.
-     ******************************************************************/
-
-    /**
-     *  Return the last modification date of this OutputHandler, as a
-     *  Java Date object
-     */
-    public final Date getDate ()
-    {
-        return _date;
-    }
-
-    /**
-     *  Return the OutputHandler name
-     */
-    public final String getName ()
-    {
-        return _name;
-    }
-
-    /**
-     *  Return the OutputHandler note
-     */
-    public final String getNote ()
-    {
-        return _note;
-    }
-
-    /**
-     *   Return the release identifier
-     */
-    public final String getRelease ()
-    {
-        return _release;
-    }
-
-    /**
-     *   Return the copyright information string
-     */
-    public final String getRights ()
-    {
-        return _rights;
-    }
-
-    /**
-     *  Returns a list of <code>Document</code> objects (one for each 
-     *  specification document).  The specification
-     *  list is generated by the OutputHandler, and specifications cannot
-     *  be added by callers.
-     *
-     *  @see Document
-     */
-    public final List<Document> getSpecification ()
-    {
-        return _specification;
-    }
-
-    /**
-     *  Return the vendor information
-     */
-    public final Agent getVendor ()
-    {
-        return _vendor;
-    }
-
-    /**
-     *  Returns this handler's encoding.
-     */
-    public String getEncoding ()
-    {
-	return _encoding;
-    }
-
-    /******************************************************************
-     * Mutator methods.
-     ******************************************************************/
-
-    /**
-     *  Pass the associated App object to this Module.
-     *  The App makes various services available.
-     */
-    public final void setApp (App app)
-    {
-        _app = app;
-    }
-
-    /**
-     *  Assigns the JHOVE engine object to provide services to this handler
-     */
-    public final void setBase (JhoveBase je)
-    {
-        _je = je;
-    }
-
-    /**
-     *  Assigns the encoding to be used by this OutputHandler
-     */
-    public void setEncoding (String encoding)
-    {
-	_encoding = encoding;
-    }
-
-    /**
-     *  Assigns a PrintWriter to do output for this OutputHandler
-     */
-    public final void setWriter (PrintWriter writer)
-    {
-        _writer = writer;
-    }
-
-    /******************************************************************
-     * Serialization methods.
-     ******************************************************************/
-
-    /**
-     * Callback allowing post-parse, pre-show analysis of object
-     * representation information.
-     * @param info Object representation information
-     */
-    public void analyze (RepInfo info)
-    {
-	/* Do nothing, which is sufficient for most handlers. */
-    }
-
-    /**
-     * Callback indicating a directory is finished being processed.
-     */
-    public void endDirectory ()
-    {
-	/* Do nothing, which is sufficient for most handlers. */
-    }
-
-    /**
-     * Callback to give the handler the opportunity to decide whether or
-     * not to process a file.  Most handlers will always return true.
-     * @param filepath File pathname
-     */
-    public boolean okToProcess (String filepath)
-    {
-	return true;
-    }
-
-    /**
-     *  Outputs information about a Module
-     */
-    public abstract void show (Module module);
-
-    /**
-     *  Outputs the information contained in a RepInfo object
-     */
-    public abstract void show (RepInfo info);
-
-    /**
-     *  Outputs information about the OutputHandler specified
-     *  in the parameter 
-     */
-    public abstract void show (OutputHandler handler);
-
-    /**
-     *  Outputs minimal information about the application
-     */
-    public abstract void show ();
-
-    /**
-     *  Outputs detailed information about the application,
-     *  including configuration, available modules and handlers,
-     *  etc.
-     */
-    public abstract void show (App app);
-
-    /**
-     *  Do the initial output.  This should be in a suitable format
-     *  for including multiple files between the header and the footer. 
-     */
-    public abstract void showHeader ();
-
-    /**
-     *  Do the final output.  This should be in a suitable format
-     *  for including multiple files between the header and the footer. 
-     */
-    public abstract void showFooter ();
-    
-    /**
-     *  Close the writer after all output has been done.
-     */
-    public void close ()
-    {
-        _writer.close ();
-    }
-
-    /**
-     * Callback indicating a new directory is being processed.
-     * @param directory Directory path
-     */
-    public void startDirectory (String directory)
-    {
-	/* Do nothing, which is sufficient for most handlers. */
-    }
-
-    /******************************************************************
-     * PRIVATE CLASS METHODS.
-     *
-     * XML methods.
-     ******************************************************************/
-
-    /**
-     * Return the XML DOCTYPE instruction.
-     * @param root Root element of the DTD
-     * @param uri  URI of the DTD
-     */
-    protected static String doctype (String root, String uri)
-    {
-	return doctype (root, null, uri);
-    }
-
-    /**
-     * Return the XML DOCTYPE instruction.
-     * @param root Root element of the DTD
-     * @param name Public name of the DTD
-     * @param uri  URI of the DTD
-     */
-    protected static String doctype (String root, String name, String uri)
-    {
-	StringBuffer s = new StringBuffer ("<!DOCTYPE " + root);
-	if (name != null) {
-	    s.append (" PUBLIC \"" + name + "\" \"");
-	}
-	else {
-	    s.append (" SYSTEM \"");
-	}
-	s.append (uri + "\">");
-
-	return s.toString ();
-    }
-
-    /**
-     * Returns, as a String, an empty XML.
-     *
-     * @param tag XML tag
-     */
-    protected static String element (String tag)
-    {
-        return "<" + tag + "/>";
-    }
-
-    /**
-     *  Returns, as a String, an XML element with a given tag and content
-     *
-     *  @param tag      An XML tag
-     *  @param content  Content string.  Characters requiring
-     *                  conversion to entitites will be converted.
-     */
-    protected static String element (String tag, String content)
-    {
-        return elementStart (tag) + encodeContent (content) + elementEnd (tag);
-    }
-
-    /**
-     *  Returns, as a String,
-     *  an XML element with a given tag and attributes
-     *
-     *  @param tag      An XML tag
-     *  @param attrs    An array of String[2] elements, where for each
-     *                  element, attrs[i][0] is the attribute key and
-     *                  attrs[i][1] is the attribute value.
-     *                  Null values are skipped.
-     */
-    protected static String element (String tag, String [][] attrs)
-    {
-        StringBuffer buffer = new StringBuffer ("<");
-        buffer.append (tag);
-        for (int i=0; i<attrs.length; i++) {
-			if (attrs[i][0] != null && attrs[i][1] != null) {
-				buffer.append (" ");
-				buffer.append (attrs[i][0]);
-				buffer.append ("=\"");
-				buffer.append (encodeValue (attrs[i][1]));
-				buffer.append ("\"");
-			}
-        }
-        buffer.append ("/>");
-
-        return buffer.toString ();
-    }
-
-    /**
-     *  Returns, as a String,
-     *  an XML element with a given tag, content and attributes
-     *
-     *  @param tag      An XML tag
-     *  @param content  Content string.  Characters requiring
-     *                  conversion to entitites will be converted.
-     *  @param attrs    An array of String[2] elements, where for each
-     *                  element, attrs[i][0] is the attribute key and
-     *                  attrs[i][1] is the attribute value.
-     *                  Null values are skipped.
-     *
-     */
-    protected static String element (String tag, String [][] attrs,
-                                     String content)
-    {
-        StringBuffer buffer = new StringBuffer ("<");
-        buffer.append (tag);
-        for (int i=0; i<attrs.length; i++) {
-			if (attrs[i][0] != null && attrs[i][1] != null) {
-				buffer.append (" ");
-				buffer.append (attrs[i][0]);
-				buffer.append ("=\"");
-				buffer.append (encodeValue (attrs[i][1]));
-				buffer.append ("\"");
-			}
-        }
-        buffer.append (">");
-        buffer.append (encodeContent (content));
-        buffer.append (elementEnd (tag));
-
-        return buffer.toString ();
-    }
-
-    /**
-     *   Returns, as a String, the closing tag of an element.  
-     *   No checking is done that opening and closing tags match.
-     *
-     *  @param tag      An XML tag
-     */
-    protected static String elementEnd (String tag)
-    {
-        return "</" + tag + ">";
-    }
-
-    /**
-     *  Returns, as a String, the opening tag of an element.
-     *
-     *  @param tag      An XML tag
-     */
-    protected static String elementStart (String tag)
-    {
-        return "<" + tag + ">";
-    }
-
-    /**
-     *   Returns, as a String, the opening tag of an element with
-     *   specified attributes.
-     *
-     *  @param tag      An XML tag
-     *  @param attrs    An array of String[2] elements, where for each
-     *                  element, attrs[i][0] is the attribute key and
-     *                  attrs[i][1] is the attribute value.
-     */
-    protected static String elementStart (String tag, String [][] attrs)
-    {
-        StringBuffer buffer = new StringBuffer ("<");
-        buffer.append (tag);
-        for (int i=0; i<attrs.length; i++) {
-            buffer.append (" ");
-            buffer.append (attrs[i][0]);
-            buffer.append ("=\"");
-            buffer.append (encodeValue (attrs[i][1]));
-            buffer.append ("\"");
-        }
-        buffer.append (">");
-
-        return buffer.toString ();
-    }
-
-    /**
-     *   Encodes a content String in XML-clean form, converting characters
-     *   to entities as necessary and removing control characters disallowed
-     *   by XML.  The null string will be converted to an empty string.
-     */
-    private static String encodeContent (String content)
-    {
-        if (content == null) {
-            content = "";
-        }
-        StringBuffer buffer = new StringBuffer (content);
-
-	/* Remove disallowed control characters from the content string. */
-        int n = buffer.length ();
-	for (int i=0; i<n; i++) {
-	    char ch = buffer.charAt (i);
-	    if ((0x00 <= ch && ch <= 0x08) || (0x0b <= ch && ch <= 0x0c) ||
-		(0x0e <= ch && ch <= 0x1f) ||  0x7f == ch) {
-		buffer.deleteCharAt (i--);
-		n--;
-	    }
-	}
-	n = 0;
-        while ((n = buffer.indexOf ("&", n)) > -1) {
-            buffer.insert (n+1, "amp;");
-            n +=5;
-        }
-        n = 0;
-        while ((n = buffer.indexOf ("<", n)) > -1) {
-            buffer.replace (n, n+1, "&lt;");
-            n += 4;
-        }
-        n = 0;
-        while ((n = buffer.indexOf (">", n)) > -1) {
-            buffer.replace (n, n+1, "&gt;");
-            n += 4;
-        }
-
-        return buffer.toString ();
-    }
-
-    /**
-     *   Encodes an attribute value String in XML-clean form, 
-     *   converting quote characters to entities and removing control
-     *   characters disallowed by XML.
-     */
-    private static String encodeValue (String value)
-    {
-        StringBuffer buffer = new StringBuffer (value);
-
-	/* Remove disallowed control characters from the value string. */
-        int n = buffer.length ();
-	for (int i=0; i<n; i++) {
-	    char ch = buffer.charAt (i);
-	    if ((0x00 <= ch && ch <= 0x08) || (0x0b <= ch && ch <= 0x0c) ||
-		(0x0e <= ch && ch <= 0x1f) ||  0x7f == ch) {
-		buffer.deleteCharAt (i--);
-		n--;
-	    }
-	}
-	    // [CC], escape &, < and > characters which are disallowed in xml
-        n = 0;
-        while ((n = buffer.indexOf ("&", n)) > -1) {
-            buffer.insert (n+1, "amp;");
-            n +=5;
-        }
-     	n = 0;
-        while ((n = buffer.indexOf ("<", n)) > -1) {
-            buffer.replace (n, n+1, "&lt;");
-            n += 4;
-        }
-        n = 0;
-        while ((n = buffer.indexOf (">", n)) > -1) {
-            buffer.replace (n, n+1, "&gt;");
-            n += 4;
-        }
-		n = 0;
-        while ((n = buffer.indexOf ("\"", n)) > -1) {
-            // [LP] fix for invalid escaping, "" quotes were accidentally left in place.
-            buffer.replace (n, n+1, "&quot;");
-            n +=7;
-        }
-
-        return buffer.toString ();
-    }
-
-    /**
-     *  Return a canonical XML declaration with default encoding.
-     */
-    protected static String xmlDecl ()
-    {
-        return "<?xml version=\"1.0\"?>";
-    }
-
-    /**
-     *  Return a canonical XML declaration with specified encoding.
-     */
-    protected static String xmlDecl (String encoding)
-    {
-        return "<?xml version=\"1.0\" encoding=\"" +
-                encoding +
-                "\"?>";
-    }
-
-    /******************************************************************
-     * Nesting level methods.
-     ******************************************************************/
-
-    /**
-     *   Returns a String containing a number of spaces equal
-     *   to the current indent level.
-     */
-    protected static String getIndent (int level)
-    {
-        StringBuffer s = new StringBuffer ();
-        for (int i=0; i<level; i++) {
-            s.append (" ");
-        }
-
-        return s.toString ();
-    }
-
-    /******************************************************************
-     * Array methods.
-     ******************************************************************/
-
-    /**
-     * Return String representation of an integer array.
-     */
-    protected static String integerArray (int [] iarray)
-    {
-    	return integerArray (iarray, ' ');
-    }
-    
-    /**
-     * Return String representation of an integer array with
-     * specified separator.
-     */
-    protected static String integerArray (int [] iarray, char separator)
-    {
-        StringBuffer buffer = new StringBuffer ();
-        for (int i=0; i<iarray.length; i++) {
-            if (i > 0) {
-                buffer.append (separator);
-            }
-            buffer.append (Integer.toString (iarray[i]));
-        }
-        return buffer.toString ();
-    }
-
-    /**
-     * Return String representation of an array of long with
-     * space separator.
-     */
-    protected static String longArray (long [] larray)
-    {
-        StringBuffer buffer = new StringBuffer ();
-        for (int i=0; i<larray.length; i++) {
-            if (i > 0) {
-                buffer.append (" ");
-            }
-            buffer.append (Long.toString (larray[i]));
-        }
-        return buffer.toString ();
-    }
-
-    /**
-     * Return String representation of an array of Rational, each evaluated
-     * as a double, with space separator.
-     */
-    protected static String rationalArray (Rational [] rarray)
-    {
-        StringBuffer buffer = new StringBuffer ();
-        for (int i=0; i<rarray.length; i++) {
-            if (i > 0) {
-                buffer.append (" ");
-            }
-            buffer.append (rarray[i].toDouble ());
-        }
-        return buffer.toString ();
-    }
-
-
-    /**
-     * Return String representation of an array of Rational, each as
-     * two integers, with space separator.
-     */
-    protected static String rationalArray10 (Rational [] rarray)
-    {
-	StringBuffer buffer = new StringBuffer ();
-	for (int i=0; i<rarray.length; i++) {
-	    if (i > 0) {
-		buffer.append (" ");
-	    }
-	    buffer.append (rarray[i].getNumerator ());
-	    buffer.append (" ");
-	    buffer.append (rarray[i].getNumerator ());
-	}
-	return buffer.toString ();
-    }
-
-    /**
-     * Return String representation of an array of double.
-     */
-    protected static String doubleArray (double [] darray)
-    {
-        StringBuffer buffer = new StringBuffer ();
-        for (int i=0; i<darray.length; i++) {
-            if (i > 0) {
-                buffer.append (" ");
-            }
-            buffer.append (Double.toString (darray[i]));
-        }
-        return buffer.toString ();
-    }
-
-
-    /* Text formatting methods. */
-    /* Convert a date to the dateTime format used by the
-     * XML schema.  This is ISO 8610 with a colon between
-     * the hour and minute fields of the time zone.  Unfortunately,
-     * SimpleDateFormat generates the time zone without the
-     * colon; this also conforms to 8601, but doesn't conform
-     * to the schema, so we have to diddle it.
-     */
-    protected String toDateTime (Date date)
-    {
-        String isoStr = iso8601.format (date);
-	// We can't directly use a SimpleDateFormat, because
-	// the 'z' field gives us the colonless time zone.
-        int len = isoStr.length ();
-	// Add the colon before the last two characters.
-        return isoStr.substring (0, len - 2) +
-		":" +
-		isoStr.substring (len - 2);
-    }
-    
-    /** A DateFormat class to address an issue of thread safety. */
-    public static class SynchronizedDateFormat extends SimpleDateFormat
-        {
-            public SynchronizedDateFormat(String pattern) {
-                super(pattern);
-            }
-            public synchronized StringBuffer format(Date date,
-                                    StringBuffer toAppendTo, FieldPosition pos) {
-                return super.format(date, toAppendTo, pos);
-            }
-      }
-
-}

jhove/classes/edu/harvard/hul/ois/jhove/Identifier.java

@@ -1,64 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class encapsulates information about an identifier
- *  for a specification document.
- */
-public class Identifier
-{
-    private IdentifierType _type;
-    private String _value;
-    private String _note;
-
-	/**
-	 *  Create an Identifier.
-	 *  @param  value  The text displayed for this Identifier.
-	 *  @param  type   The type of identification.
-	 */
-    public Identifier (String value, IdentifierType type)
-    {
-	_value = value;
-	_type  = type;
-    }
-
-	/**
-	 *  Create an Identifier.
-	 *  @param  value  The text displayed for this Identifier.
-	 *  @param  type   The type of identification.
-	 *  @param  note   A note giving supplementary information.
-	 */
-    public Identifier (String value, IdentifierType type, String note)
-    {
-	this (value, type);
-	_note = note;
-    }
-
-	/**
-	 *  Return the identifier type.
-	 */
-    public IdentifierType getType ()
-    {
-	return _type;
-    }
-
-	/**
-	 *  Return the displayable string.
-	 */
-    public String getValue ()
-    {
-	return _value;
-    }
-
-	/**
-	 *  Return the note, which will be null if none was specified.
-	 */
-    public String getNote()
-    {
-	return _note;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/IdentifierType.java

@@ -1,115 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class defines enumerated types for an Identifier of a
- *  format specification document. 
- *  Applications will not create or modify IdentifierTypes, but will
- *  use one of the predefined IdentifierType instances 
- *  ANSI, DDC, DOI, ECMA, HANDLE, ISO, ISBN, LC, LCCN,
- *  NISO, PII, RFC, SICI, URI, URL, URN, or OTHER.
- *
- *  @see  Identifier
- */
-public final class IdentifierType
-    extends EnumerationType
-{
-    /**
-     *  Identifier type for American National Standards Institute.
-     */
-    public static final IdentifierType ANSI = new IdentifierType ("ANSI");
-    /**
-     *  Identifier type for Dewey Decimal Classification.
-     */
-    public static final IdentifierType DDC = new IdentifierType ("DDC");
-    /**
-     *  Identifier type for Digital Object Identifier.
-     */
-    public static final IdentifierType DOI = new IdentifierType ("DOI");
-    /**
-     *  Identifier type for ECMA.
-     */
-    public static final IdentifierType ECMA = new IdentifierType ("ECMA");
-    /**
-     *  Identifier type for CNRI Handle.
-     */
-    public static final IdentifierType HANDLE = new IdentifierType ("Handle");
-    /**
-     *  Identifier type for International Standards Organization.
-     */
-    public static final IdentifierType ISO = new IdentifierType ("ISO");
-    /**
-     *  Identifier type for International Standard Book Number.
-     */
-    public static final IdentifierType ISBN = new IdentifierType ("ISBN");
-    /**
-     *  Identifier type for Library of Congress classification.
-     */
-    public static final IdentifierType LC = new IdentifierType ("LC");
-    /**
-     *  Identifier type for Library of Congress catalogue number.
-     */
-    public static final IdentifierType LCCN = new IdentifierType ("LCCN");
-    /**
-     *  Identifier type for NISO standard number.
-     */
-    public static final IdentifierType NISO = new IdentifierType ("NISO");
-    /**
-     *  Identifier type for Publisher Item Identifier.
-     */
-    public static final IdentifierType PII = new IdentifierType ("PII");
-    /**
-     *  Identifier type for IETF Request for Comment.
-     */
-    public static final IdentifierType RFC = new IdentifierType ("RFC");
-    /**
-     *  Identifier type for Serial Item and Contribution Identifier.
-     */
-    public static final IdentifierType SICI = new IdentifierType ("SICI");
-    /**
-     *  Identifier type for Uniform Resource Identifier.
-     */
-    public static final IdentifierType URI = new IdentifierType ("URI");
-    /**
-     *  Identifier type for Uniform Resource Locator.
-     */
-    public static final IdentifierType URL = new IdentifierType ("URL");
-    /**
-     *  Identifier type for Uniform Resource Name.
-     */
-    public static final IdentifierType URN = new IdentifierType ("URN");
-    /**
-     *  Identifier type for CCITT.
-     */
-    public static final IdentifierType CCITT = new IdentifierType ("CCITT");
-    /**
-     *  Identifier type for International Telecommunication Union.
-     */
-    public static final IdentifierType ITU = new IdentifierType ("ITU");
-    /**
-     *  Identifier type for Japan Electronics and Information Technology
-     *  Industries Association.
-     */
-    public static final IdentifierType JEITA = new IdentifierType ("JEITA");
-    /**
-     *  Identifier type for whatever doesn't fit other categories.
-     */
-    public static final IdentifierType OTHER = new IdentifierType ("Other");
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Applications will never create SignatureTypes directly.
-     **/
-    private IdentifierType (String value)
-    {
-	super (value);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/InfoMessage.java

@@ -1,62 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class encapsulates an informational message from a Module, giving
- *  information (not necessarily a problem)
- *  about the content being analyzed or the way that Jhove
- *  deals with it. 
- */
-public class InfoMessage
-    extends Message
-{
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Create an InfoMessage.
-     *  @param  message   Human-readable string giving the information.
-     */
-    public InfoMessage (String message)
-    {
-	super (message);
-    }
-
-    /** 
-     *  Create an InfoMessage.
-     *  @param  message   Human-readable string giving the information.
-     *  @param  offset    The offset in the file relevant to the
-     *                    situation being described
-     */
-    public InfoMessage (String message, long offset)
-    {
-	super (message, offset);
-    }
-
-    /** 
-     *  Create an InfoMessage.
-     *  @param  message   Human-readable string giving the information.
-     *  @param  subMessage Human-readable additional information.
-     */
-    public InfoMessage (String message, String subMessage)
-    {
-        super (message, subMessage);
-    }
-
-    /** 
-     *  Create an InfoMessage.
-     *  @param  message   Human-readable string giving the information.
-     *  @param  subMessage Human-readable additional information.
-     *  @param  offset    The offset in the file relevant to the
-     *                    situation being described
-     */
-    public InfoMessage (String message, String subMessage, long offset)
-    {
-        super (message, subMessage, offset);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/InternalSignature.java

@@ -1,140 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class encapsulates information about internal format signatures.
- *   The value of a Signature may be either a String or a byte array
- *   (stored as an int array to avoid signed byte problems).
- */
-public class InternalSignature
-    extends Signature
-{
-    private boolean _hasFixedOffset;
-    private int _offset;
-
-    /**
-     *  Creates an InternalSignature given a string value, a type,
-     *  and a use requirement.  An InternalSignature created with
-     *  this constructor does not have a fixed byte offset.
-     */
-    public InternalSignature (String value, SignatureType type,
-			      SignatureUseType use)
-    {
-	super (value, type, use);
-	_hasFixedOffset = false;
-    }
-
-    /**
-     *  Creates an InternalSignature given a byte array, a type,
-     *  and a use requirement.  An InternalSignature created with
-     *  this constructor does not have a fixed byte offset.
-     */
-    public InternalSignature (int[] value, SignatureType type,
-			      SignatureUseType use)
-    {
-	super (value, type, use);
-	_hasFixedOffset = false;
-    }
-
-    /**
-     *  Creates an InternalSignature given a string value, a type,
-     *  a use requirement, and a byte offset.  An InternalSignature 
-     *  created with this constructor has a fixed byte offset.
-     */
-    public InternalSignature (String value, SignatureType type,
-			      SignatureUseType use, int offset)
-    {
-	super (value, type, use);
-	_offset = offset;
-	_hasFixedOffset = true;
-    }
-
-    /**
-     *  Creates an InternalSignature given a byte array, a type,
-     *  a use requirement, and a byte offset.  An InternalSignature 
-     *  created with this constructor has a fixed byte offset.
-     */
-    public InternalSignature (int[] value, SignatureType type,
-			      SignatureUseType use, int offset)
-    {
-	super (value, type, use);
-	_offset = offset;
-	_hasFixedOffset = true;
-    }
-
-    /**
-     *  Creates an InternalSignature given a string value, a type,
-     *  a use requirement, and a note.  An InternalSignature created with
-     *  this constructor does not have a fixed byte offset.
-     */
-    public InternalSignature (String value, SignatureType type,
-			      SignatureUseType use, String note)
-    {
-	super (value, type, use, note);
-	_hasFixedOffset = false;
-    }
-
-    /**
-     *  Creates an InternalSignature given a byte array, a type,
-     *  a use requirement, and a note.  An InternalSignature created with
-     *  this constructor does not have a fixed byte offset.
-     */
-    public InternalSignature (int[] value, SignatureType type,
-			      SignatureUseType use, String note)
-    {
-	super (value, type, use, note);
-	_hasFixedOffset = false;
-    }
-
-    /**
-     *  Creates an InternalSignature given a string value, a type,
-     *  a use requirement, a byte offset, and a note.
-     *  An InternalSignature created with
-     *  this constructor has a fixed byte offset.
-     */
-    public InternalSignature (String value, SignatureType type,
-			      SignatureUseType use, int offset,
-			      String note)
-    {
-	super (value, type, use, note);
-	_offset = offset;
-	_hasFixedOffset = true;
-    }
-
-    /**
-     *  Creates an InternalSignature given a string value, a type,
-     *  a use requirement, a byte offset, and a note.
-     *  An InternalSignature created with
-     *  this constructor has a fixed byte offset.
-     */
-    public InternalSignature (int[] value, SignatureType type,
-			      SignatureUseType use, int offset,
-			      String note)
-    {
-	super (value, type, use, note);
-	_offset = offset;
-	_hasFixedOffset = true;
-    }
-
-    /**
-     *  Returns the byte offset.  This value is meaningful only
-     *  if this InternalSignature has a fixed byte offset.
-     */
-    public int getOffset ()
-    {
-	return _offset;
-    }
-
-    /**
-     *  Returns <code>true</code> if this InternalSignature
-     *  has a fixed byte offset.
-     */
-    public boolean hasFixedOffset ()
-    {
-	return _hasFixedOffset;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/JhoveException.java

@@ -1,19 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-public class JhoveException
-    extends Exception
-{
-    public JhoveException ()
-    {
-	super ();
-    }
-    public JhoveException (String message)
-    {
-	super (message);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/MacStuff.java

@@ -1,96 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-import java.lang.reflect.*;
-//import com.apple.eio.FileManager;
-
-
-/**
- * Code specific to Macintosh Java. This class consists of static
- * methods, and should not be instantiated.  Its methods should be
- * called only on the Macintosh OS X platform.  It requires the 
- * package com.apple.eio.FileManager.
- * 
- * @author Gary McGath
- *
- */
-public class MacStuff {
-    
-    /** Private constructor to prevent instantiation.*/
-    private MacStuff ()
-    {
-    }
-    
-    
-    /**
-     * Determines if we're running on a Macintosh,
-     * so appropriate UI adjustments can be made.  In accordance
-     * with Apple's recommendations, this checks for the existence
-     * of the mrj.version property rather than checking the os.name
-     * property.
-     */
-    public static boolean isMacintosh ()
-    {
-        return (System.getProperty ("mrj.version") != null);
-
-    }
-    
-    
-
-    /**
-     * Returns true if a file has the given file type.
-     * This method uses FileManager in a dynamic way, so 
-     * that it will merely throw a ClassNotFound exception
-     * if it fails.
-     * 
-     * Currently this code isn't actually used, since the
-     * Jhove application is specified as checking only internal
-     * signatures.  Should some future version or add-on
-     * code wish to use it, the code should
-     * look something like this:
-     * 
-     * <code><pre>
-     *           try {
-     *               if (sig.getType() == SignatureType.FILETYPE &&
-     *                       MacStuff.isMacintosh ()) {
-     *                   if (!MacStuff.fileHasType(file, sig.getValueString())) {
-     *                       info.setConsistent (false);
-     *                   }    
-     *               }
-     *           }
-     *           catch (ClassNotFoundException e) {
-     *               // Mac classes missing -- can't check filetype.
-     *           }
-     * </pre></code>
-     */
-    public static boolean fileHasType(File file, String type)
-            throws ClassNotFoundException
-    {
-        // Need to make this completely dynamic.
-        //return type.equals (FileManager.getFileType (file));
-        try {
-            if (type == null) {
-                return false;
-            }
-            Class fmclass = Class.forName ("com.apple.eio.FileManager");
-            Class[] params = new Class[1];
-            params[0] = Class.forName ("java.io.File");
-            Object[] args = new Object[1];
-            args[0] = file; 
-            Method method = fmclass.getMethod ("getFileType", params);
-            String ftype = (String) method.invoke (null, args); 
-            return (type.equals (ftype));
-        }
-        catch (ClassNotFoundException e) {
-            throw e;
-        }
-        catch (Exception f) {
-            return false;
-        }
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/Message.java

@@ -1,131 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class encapsulates a String to be displayed. 
- */
-public abstract class Message
-{
-    /******************************************************************
-     * PUBLIC CLASS FIELDS.
-     ******************************************************************/
-
-    /** Value indicating a null offset. */
-    public static final long NULL = -1;
-
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /** Message text. */
-    protected String _message;
-    
-    /** Additional information. */
-    protected String _subMessage;
-    
-    /** Byte offset to which message applies. */
-    protected long _offset;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     *  Create a Message.  This constructor cannot be invoked directly,
-     *                     since Message is abstract.
-     *  @param  message   Human-readable string.
-     */
-    protected Message (String message)
-    {
-	init (message, null, NULL);
-    }
-
-    /**
-     *  Create a Message.  This constructor cannot be invoked directly,
-     *                     since Message is abstract.  The second argument
-     *                     adds secondary details to the primary message;
-     *                     the message will typically be displayed in the
-     *                     form "message:subMessage".
-     *  @param  message    Human-readable string.
-     *  @param  subMessage Human-readable additional information.
-     */
-    protected Message (String message, String subMessage)
-    {
-	init (message, subMessage, NULL);
-    }
-
-    /**
-     *  Create a Message.  This constructor cannot be invoked directly,
-     *                     since Message is abstract.  The second argument
-     *                     adds secondary details to the primary message;
-     *                     the message will typically be displayed in the
-     *                     form "message:subMessage".
-     *  @param  message    Human-readable string.
-     *  @param  offset     Byte offset associated with the message.
-     */
-    protected Message (String message, long offset)
-    {
-	init (message, null, offset);
-    }
-
-    /**
-     *  Create a Message.  This constructor cannot be invoked directly,
-     *                     since Message is abstract.  The second argument
-     *                     adds secondary details to the primary message;
-     *                     the message will typically be displayed in the
-     *                     form "message:subMessage".
-     *  @param  message    Human-readable string.
-     *  @param  subMessage Human-readable additional information.
-     *  @param  offset     Byte offset associated with the message.
-     */
-    protected Message (String message, String subMessage, long offset)
-    {
-	init (message, subMessage, offset);
-    }
-
-    /**
-     * Initialize the <tt>Message</tt> object.
-     *  @param  message    Human-readable string.
-     *  @param  subMessage Human-readable additional information.
-     */
-    private void init (String message, String subMessage, long offset)
-    {
-        _message    = message;
-        _subMessage = subMessage;
-	_offset     = offset;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     *
-     * Accessor methods.
-     ******************************************************************/
-
-    /**
-     *  Get the message string.
-     */
-    public String getMessage ()
-    {
-        return _message;
-    }
-
-    /**
-     *  Get the submessage string.
-     */
-    public String getSubMessage ()
-    {
-        return _subMessage;
-    }
-
-    /**
-     *  Return the offset to which the information is related.
-     */
-    public long getOffset ()
-    {
-	return _offset;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/Module.java

@@ -1,264 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003-4 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-import java.util.*;
-
-/**
- * Public interface for Jhove format-specific plug-in modules.
- * 
- * All format modules must implement the Module interface; 
- * usually the best way to do this will be to subclass ModuleBase.
- * Modules must be declared in the configuration file and present
- * in the Classpath to be recognized by Jhove.  
- *
- * @see  ModuleBase
- */
-public interface Module
-{
-    public static final int
-	MAXIMUM_VERBOSITY = 1,
-	MINIMUM_VERBOSITY = 2;
-
-    /**
-     * Per-instantiation initialization.
-     *
-     * @param init    Initialization parameter.  This is typically obtained
-     *                from the configuration file.
-     */
-    public void init (String init)
-	throws Exception;
-
-    /**
-     * Sets list of default parameters.
-     * 
-     * @param   params     A List whose elements are Strings.
-     *                     May be empty.
-     */
-    public void setDefaultParams (List<String> params);
-
-
-    /**
-     *  Applies the default parameters.
-     */
-    public void applyDefaultParams ()
-        throws Exception;
-    
-    /** Reset parameter settings.
-     *  Returns to a default state without any parameters.
-     */
-    public void resetParams ()
-        throws Exception;
-
-    /**
-     * Per-action initialization.
-     * May be called multiple times.
-     *
-     * @param param   Initialization parameter.
-     */
-    public void param (String param)
-	throws Exception;
-
-    /**
-     *  Pass the associated App object to this Module.
-     *  The App makes various services available.
-     */
-    public void setApp (App app);
-
-    /**
-     *  Pass the JHOVE engine object to this Module.
-     */
-    public void setBase (JhoveBase je);
-
-    /**
-     *  Set the degree of verbosity desired from the module.  
-     *
-     *  @param  verbosity  The requested verbosity value.  
-     */
-    public void setVerbosity (int verbosity);
-
-    /**
-     *  Return the name of this Module.
-     */
-    public String getName ();
-    
-    /**
-     *   Return the release identifier
-     */    
-    public String getRelease ();
-
-    /**
-     *  Return the last modification date of the Module, as a
-     *  Java Date object
-     */
-    public Date getDate ();
-
-    /**
-     *  Return the vendor information
-     */
-    public Agent  getVendor ();
-
-    /**
-     *   Return the copyright information string
-     */
-    public String getRights ();
-
-    /**
-     *   Return the Module note
-     */
-    public String getNote ();
-
-    /**
-     *   Return the array of format names supported by this Module
-     */
-    public String [] getFormat ();
-
-    /**
-     *   Return the array of MIME type strings for formats supported
-     *   by this Module
-     */
-    public String [] getMimeType ();
-
-    /**
-     *  Return details as to the specific format versions or 
-     *  variants that are supported by this Module
-     */
-    public String getCoverage ();
-
-    /**
-     *   Return the List of Signatures recognized by this Module
-     */
-    public List<Signature> getSignature ();
-
-    /**
-     *  Returns a list of <code>Document</code> objects (one for each 
-     *  specification document of the format).  The specification
-     *  list is generated by the Module, and specifications cannot
-     *  be added by callers.
-     *
-     *  @see Document
-     */
-    public List<Document> getSpecification ();
-
-    /**
-     *   Return the string describing well-formedness criteria
-     */
-    public String getWellFormedNote ();
-
-    /**
-     *   Returns the RepInfo note
-     */
-    public String getRepInfoNote ();
-
-    /**
-     *   Returns the string describing validity criteria
-     */
-    public String getValidityNote ();
-
-    /**
-     *  Returns the random access flag (true if the module operates
-     *  on random access files, false if it operates on streams)
-     */
-    public boolean isRandomAccess ();
-    
-    /**
-     *  Returns <code>true</code> if the module supports a given
-     *  named feature, and <code>false</code> if the feature is
-     *  unsupported or unknown.
-     */
-    public boolean hasFeature (String feature);
-
-    /**
-     *  Returns the full list of features. 
-     */
-    public List<String> getFeatures ();
-    
-    /**
-     *  Returns the list of default parameters. 
-     */
-    public List<String> getDefaultParams ();
-
-
-
-    /**
-     *   Parse the content of a stream digital object and store the
-     *   results in RepInfo.
-     *   A given Module will normally implement only one of the two
-     *   parse methods, leaving the other as a stub.
-     *
-     *   @param stream    An InputStream, positioned at its beginning,
-     *                    which is generated from the object to be parsed.
-     *                    If multiple calls to <code>parse</code> are made 
-     *                    on the basis of a nonzero value being returned,
-     *                    a new InputStream must be provided each time.
-     * 
-     *   @param info      A fresh (on the first call) RepInfo object 
-     *                    which will be modified
-     *                    to reflect the results of the parsing
-     *                    If multiple calls to <code>parse</code> are made 
-     *                    on the basis of a nonzero value being returned, 
-     *                    the same RepInfo object should be passed with each
-     *                    call.
-     *
-     *   @param parseIndex  Must be 0 in first call to <code>parse</code>.  If
-     *                    <code>parse</code> returns a nonzero value, it must be
-     *                    called again with <code>parseIndex</code> 
-     *                    equal to that return value.
-     */
-    public int parse (InputStream stream, RepInfo info, int parseIndex)
-    throws IOException;
-
-    /**
-     *   Parse the content of a random access digital object and store the
-     *   results in RepInfo.
-     *   A given Module will normally implement only one of the two
-     *   parse methods, leaving the other as a stub.
-     *
-     *   @param file      A RandomAccessFile, positioned at its beginning,
-     *                    which is generated from the object to be parsed
-     *   @param info      A fresh RepInfo object which will be modified
-     *                    to reflect the results of the parsing
-     */
-    public void parse (RandomAccessFile file, RepInfo info)
-        throws IOException;
-
-    /**
-     *  Check if the digital object conforms to this Module's
-     *  internal signature information.
-     *
-     *   @param file      A File object for the object being parsed
-     *   @param stream    An InputStream, positioned at its beginning,
-     *                    which is generated from the object to be parsed
-     *   @param info      A fresh RepInfo object which will be modified
-     *                    to reflect the results of the test
-     */
-    public void checkSignatures (File file,
-                InputStream stream, 
-                RepInfo info)
-        throws IOException;
-
-    /**
-     *  Check if the digital object conforms to this Module's
-     *  internal signature information.
-     *
-     *   @param file      A File object for the object being parsed
-     *   @param raf       A RandomAccessFile, positioned at its beginning,
-     *                    which is generated from the object to be parsed
-     *   @param info      A fresh RepInfo object which will be modified
-     *                    to reflect the results of the test
-     */
-    public void checkSignatures (File file, 
-            RandomAccessFile raf, 
-            RepInfo info)
-        throws IOException;
-
-	/**
-	 *  Generates information about this Module.
-	 *  The format of the output depends on the OutputHandler.
-	 */
-    public void show (OutputHandler handler);
-}

jhove/classes/edu/harvard/hul/ois/jhove/ModuleInfo.java

@@ -1,17 +0,0 @@
-package edu.harvard.hul.ois.jhove;
-
-/** A small class to hold information about a module. */
-public class ModuleInfo {
-    public String clas;
-    public String init;
-    public String[] params;
-    
-    public ModuleInfo (String className) {
-        clas = className;
-    }
-    
-    public ModuleInfo (String className, String init) {
-        clas = className;
-        this.init =  init;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/ObjectIdentifier.java

@@ -1,118 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003-4 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-import java.util.*;
-
-/**
- *  Module for identification of a document.  "Identification"
- *  means determining, by querying modules successively, what the format
- *  of a document is.  The Bytestream module is always queried last,
- *  so a document will by identified as a Bytestream if all else fails.
- */
-public class ObjectIdentifier
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    private List _moduleList;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-    public ObjectIdentifier (List moduleList) 
-    {
-	_moduleList = moduleList;
-    }
-
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     *
-     * Processing methods.
-     *
-     ******************************************************************/
-
-    /**
-     *  Perform identification on a file.  The file is parsed by
-     *  each of the modules in the module list until one
-     *  declares that the file is well-formed. It is assumed
-     *  that there is a module in the list (normally Bytestream
-     *  at the end) which will always consider a file well-formed.
-     */
-    public void identify (File file, RepInfo info, 
-			  String parm, boolean verbose,
-			  boolean shortCheck) 
-	                 throws IOException 
-    {
-	/******************************************************
-	 *  Go through all modules, in the order in the config
-	 *  file, calling the parse method till we find one 
-         *  which matches.
-	 ******************************************************/
-
-	ListIterator modIter = _moduleList.listIterator();
-	while (modIter.hasNext ()) {
-	    /* We need clean RepInfo for each run */
-	    RepInfo info1;
-	    info1 = (RepInfo) info.clone ();
-
-	    Module mod = (Module) modIter.next ();
-	    try {
-                if (!mod.hasFeature("edu.harvard.hul.ois.jhove.canValidate")) {
-                    continue;
-                }
-		if (mod.isRandomAccess ()) {
-                    RandomAccessFile raf = 
-                        new RandomAccessFile (file, "r");
-                    mod.param (parm);
-                    if (verbose) {
-                        mod.setVerbosity (Module.MAXIMUM_VERBOSITY);
-                    }
-                    if (shortCheck) {
-                        mod.checkSignatures (file, raf, info1);
-                    }
-                    else {
-                        mod.parse (raf, info1);
-                    }
-                    raf.close ();
-                }
-		else {
-		    InputStream stream = new FileInputStream (file);
-		    mod.param (parm);
-		    if (shortCheck) {
-		        mod.checkSignatures (file, stream, info1);
-		    }
-		    else {
-                        int parseIndex = mod.parse (stream, info1, 0);
-                        while (parseIndex != 0) {
-                            stream.close ();
-                            stream = new FileInputStream (file);
-                            parseIndex = mod.parse (stream, info1, parseIndex);
-                        }
-		    }
-		    stream.close ();
-		}
-	    }
-            catch (Exception e) {
-		/*  The assumption is that in trying to analyze
-		    the wrong type of file, the module may go
-		    off its track and throw an exception, so we
-		    just continue on to the next module.
-		*/
-            continue;
-	    }
-	    if (info1.getWellFormed () == RepInfo.TRUE) {
-               info.copy (info1);
-               break;
-	    }
-	}
-    }
-
-    
-}

jhove/classes/edu/harvard/hul/ois/jhove/OutputHandler.java

@@ -1,196 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-import java.util.*;
-
-/**
- * Public interface for Jhove output handlers.
- * All output handlers must implement OutputHandler, and in 
- * normal cases should subclass HandlerBase.
- */
-public interface OutputHandler
-{
-    
-    /**
-     * Reset the handler. This needs to be called before each invocation.
-     */
-    public void reset ();
-
-    /**
-     * Callback allowing post-parse, pre-show analysis of object
-     * representation information.
-     * @param info Object representation information
-     */
-    public void analyze (RepInfo info);
-
-    /**
-     * Callback indicating a directory is finished being processed.
-     * Most handlers will do nothing.
-     */
-    public void endDirectory ();
-
-    /**
-     *  Returns the name of this handler
-     */
-    public String getName ();
-    /**
-     *  Returns release information for this handler
-     */
-    public String getRelease ();
-
-    /**
-     *  Returns the last modification date of this handler
-     */
-    public Date getDate ();
-
-    /**
-     *  Returns a List of Document objects giving the format
-     *  specification documentation
-     *
-     *  @see Document
-     */
-    public List<Document> getSpecification ();
-
-    /**
-     *  Returns a List of Agent objects giving the vendor(s)
-     *  of this handler.
-     */
-    public Agent getVendor ();
-
-    /**
-     *  Returns this handler's note
-     */
-    public String getNote ();
-
-    /**
-     *  Returns this handler's copyright information
-     */
-    public String getRights ();
-
-    /**
-     *  Returns this handler's encoding.
-     */
-    public String getEncoding ();
-
-    /**
-     * Per-instantiation initialization.
-     *
-     * @param init    Initialization parameter.  This is typically obtained
-     *                from the configuration file.
-     */
-    public void init (String init)
-	throws Exception;
-
-    /**
-     * Callback to give the handler the opportunity to decide whether or
-     * not to process a file.  Most handlers will always return true.
-     * @param filepath File pathname
-     */
-    public boolean okToProcess (String filepath);
-
-    /**
-     * Sets list of default parameters.
-     * 
-     * @param   params     A List whose elements are Strings.
-     *                     May be empty.
-     */
-    public void setDefaultParams (List<String> params);
-
-
-    /**
-     *  Applies the default parameters.
-     */
-    public void applyDefaultParams ()
-        throws Exception;
-    
-    /** Reset parameter settings.
-     *  Returns to a default state without any parameters.
-     */
-    public void resetParams ()
-        throws Exception;
-
-    /**
-     * Per-action initialization.
-     *
-     * @param param   Initialization parameter.
-     */
-    public void param (String param)
-	throws Exception;
-
-    /**
-     *  Assigns an application object to provide services to this handler
-     */
-    public void setApp (App app);
-
-    /**
-     *  Assigns the JHOVE engine object to provide services to this handler
-     */
-    public void setBase (JhoveBase je);
-
-    /**
-     *  Assigns the encoding to be used by this OutputHandler
-     */
-    public void setEncoding (String encoding);
-
-    /**
-     *  Assigns a PrintWriter to do output for this OutputHandler
-     */
-    public void setWriter (PrintWriter output);
-
-    /**
-     *  Outputs information about a Module
-     */
-    public void show (Module module);
-
-    /**
-     *  Outputs the information contained in a RepInfo object
-     */
-    public void show (RepInfo info);
-
-    /**
-     *  Outputs information about the OutputHandler specified
-     *  in the parameter 
-     */
-    public void show (OutputHandler handler);
-
-    /**
-     *  Outputs minimal information about the application
-     */
-    public void show ();
-
-    /**
-     *  Outputs detailed information about the application,
-     *  including configuration, available modules and handlers,
-     *  etc.
-     */
-    public void show (App app);
-
-    /**
-     *  Do the initial output.  This should be in a suitable format
-     *  for including multiple files between the header and the footer. 
-     */
-    public void showHeader ();
-
-    /**
-     *  Do the final output.  This should be in a suitable format
-     *  for including multiple files between the header and the footer. 
-     */
-    public void showFooter ();
-
-    /**
-     *  Do appropriate finalization after all output is complete.
-     */
-    public void close ();
-
-    /**
-     * Callback indicating a new directory is being processed.
-     * Most handlers will do nothing.
-     * @param directory Directory path
-     */
-    public void startDirectory (String directory);
-}

jhove/classes/edu/harvard/hul/ois/jhove/Property.java

@@ -1,214 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.util.*;
-
-/**
- *  This class encapsulates arbitrary format-specific properties.
- *  A Property's value can be a simple object or a structure.
- *  If it is a simple object, it has arity SCALAR.  If it is
- *  a structure, its must be a Map, a List, a Set, or an array,
- *  with corresponding Arity.  The simple object (in the case of
- *  arity SCALAR) or the components of the structure must have a
- *  type corresponding to one of the enumerations given by
- *  <code>PropertyType</code>.
- *
- *  The components of a Property may themselves be Property 
- *  objects, allowing nested structures.
- *
- *  @see PropertyType
- *  @see PropertyArity
- */
-public class Property
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    private String _name;
-    private PropertyType _type;
-    private PropertyArity _arity;
-    private Object _value;
-
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-	/**
-	 *  Creates a Property with arity SCALAR.
-	 *
-	 *  @param   name   The displayable name of the property
-	 *  @param   type   The type of property
-	 *  @param   value  The value of the property.  The type of the
-	 *                  parameter must agree with <code>type</code>.
-	 */
-    public Property (String name, PropertyType type, Object value)
-    {
-	init (name, type, PropertyArity.SCALAR, value);
-    }
-
-	/**
-	 *  Creates a Property with a given name, type, arity and value.
-	 *
-	 *  @param   name   The displayable name of the property.
-	 *  @param   type   The type of property.
-	 *  @param   arity  The arity of the property.
-	 *  @param   value  The value of the property.  If the arity is
-	 *		SCALAR, the type of this parameter must agree
-	 *		with <code>type</code>.  Otherwise, the arity
-	 *              must agree with <code>arity</code>, and its
-	 *              components must agree with <code>type</code>.
-	 */
-    public Property (String name, PropertyType type, PropertyArity arity,
-		     Object value)
-    {
-	init (name, type, arity, value);
-    }
-
-    private void init (String name, PropertyType type, PropertyArity arity,
-		       Object value)
-    {
-	/* Some limited type checking. Checking for mismatched
-           types here may help avoid difficult chasing down
-           of the bugs such mismatches cause. */
-	if (value == null) {
-	    throw new NullPointerException ("Null value for Property not permitted");
-	}
-	if (arity == PropertyArity.SCALAR) {
-	    if (value instanceof List ||
-		    value instanceof Map ||
-		    value instanceof Set) {
-		throw new IncompatibleClassChangeError
-			("Wrong class for Scalar Property");
-	    }
-	}
-	else if (arity == PropertyArity.MAP) {
-	    if (!(value instanceof Map)) {
-		throw new IncompatibleClassChangeError
-			("Wrong class for Map Property");
-	    }
-
-	}
-	else if (arity == PropertyArity.SET) {
-	    if (!(value instanceof Set)) {
-		throw new IncompatibleClassChangeError
-			("Wrong class for Set Property");
-	    }
-
-	}
-	else if (arity == PropertyArity.LIST) {
-	    if (!(value instanceof List)) {
-		throw new IncompatibleClassChangeError
-			("Wrong class for List Property");
-	    }
-
-	}
-
-	_name  = name;
-	_type  = type;
-	_arity = arity;
-	_value = value;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     *
-     * Accessor methods.
-     ******************************************************************/
-
-	/**
-	 *   Returns the arity (type of structure) of this Property.
-	 */
-    public PropertyArity getArity ()
-    {
-	return _arity;
-    }
-
-    /**
-     * Return a property by its name, regardless of its position in the
-     * structural hierarchy of properties.
-     * @param name Property name
-     * @return Named property (or null)
-     */
-    public Property getByName (String name)
-    {
-	if (_name.equals (name)) {
-	    return this;
-	}
-
-	if (!_arity.equals (PropertyArity.SCALAR) &&
-	    _type.equals (PropertyType.PROPERTY)) {
-	    if (_arity.equals (PropertyArity.ARRAY)) {
-		Property [] array = (Property []) _value;
-		for (int i=0; i<array.length; i++) {
-		    Property prop = array[i].getByName (name);
-		    if (prop != null) {
-			return prop;
-		    }
-		}
-	    }
-	    else if (_arity.equals (PropertyArity.LIST)) {
-		List list = (List) _value;
-		int len = list.size ();
-		for (int i=0; i<len; i++) {
-		    Property prop = ((Property) list.get (i)).getByName (name);
-		    if (prop != null) {
-			return prop;
-		    }
-		}
-	    }
-	    else if (_arity.equals (PropertyArity.MAP)) {
-		Collection coll = ((Map) _value).values ();
-		Iterator iter = coll.iterator ();
-		while (iter.hasNext ()) {
-		    Property prop = ((Property) iter.next ()).getByName (name);
-		    if (prop != null) {
-			return prop;
-		    }
-		}
-	    }
-	    else if (_arity.equals (PropertyArity.SET)) {
-		Iterator iter = ((Set) _value).iterator ();
-		while (iter.hasNext ()) {
-		    Property prop = ((Property) iter.next ()).getByName (name);
-		    if (prop != null) {
-			return prop;
-		    }
-		}
-	    }
-	}
-
-	return null;
-    }
-
-	/**
-	 *   Returns the displayable name of this Property.
-	 */
-    public String getName ()
-    {
-	return _name;
-    }
-
-	/**
-	 *  Returns the type of this Property.
-	 *  If the arity is other than SCALAR, the type refers to the
-	 *  compononents of the Property structure.
-	 */
-    public PropertyType getType ()
-    {
-	return _type;
-    }
-
-	/**
-	 *  Returns the Object which is the Property's value.
-	 */
-    public Object getValue ()
-    {
-	return _value;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/PropertyArity.java

@@ -1,60 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class represents the arity (structure type) of a Property.
- *  Applications will not create or modify PropertyArities, but will
- *  use one of the predefined PropertyArity instances 
- *  ARRAY, LIST, MAP, SCALAR, or SET.
- *
- *   @see Property
- */
-public final class PropertyArity
-    extends EnumerationType
-{
-	/**
-	 *  An Arity corresponding to a Java array.  For the Java types
-	 *  <code>Integer</code>, <code>Boolean</code>, <code>Byte</code>, 
-	 *  <code>Character</code>, <code>Double</code>, 
-	 *  <code>Float</code>, <code>Long</code>, and
-	 *  <code>Short</code>, a Property with arity ARRAY is an array of primitive
-	 *  Java types rather than Objects (e.g., <code>int</code> 
-	 *  rather than <code>Integer</code>).
-	 */
-    public static final PropertyArity ARRAY = new PropertyArity ("Array");
-    
-    /**
-     *  An Arity corresponding to java.util.List or any of its derived classes.
-     */
-    public static final PropertyArity LIST = new PropertyArity ("List");
-
-    /**
-     *  An Arity corresponding to java.util.Map or any of its derived classes.
-     */
-    public static final PropertyArity MAP = new PropertyArity ("Map");
-
-    /**
-     *  An Arity corresponding to a simple object, which must be of a
-     *  type corresponding to one of the instances of 
-     *  <code>PropertyType</code>.
-     */
-    public static final PropertyArity SCALAR = new PropertyArity ("Scalar");
-
-    /**
-     *  An Arity corresponding to java.util.Set or any of its derived classes.
-     */
-    public static final PropertyArity SET = new PropertyArity ("Set");
-
-    /** 
-     *  Applications will never create PropertyArities directly.
-     **/
-    private PropertyArity (String value)
-    {
-	super (value);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/PropertyPath.java

@@ -1,278 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-import java.util.*;
-
-/**
- * A description of the location of a Property in a
- * RepInfo object.  Properties can be nested under other
- * properties, in lists, maps, or subproperties. This class
- * provides a general way to specify their location.
- * 
- * For the moment, only paths by name are fully supported. 
- *
- * @author Gary McGath
- *
- */
-public class PropertyPath {
-
-    private List pathInfo;
-    
-    /**
-     * No-argument constructor.
-     * Creates an empty path.
-     */
-    public PropertyPath ()
-    {
-        pathInfo = new LinkedList ();
-    }
-    
-    /**
-     *  Cloning constructor.
-     *  This creates a new pathInfo list, whose elements
-     *  are shared with the original PropertyPath's list.
-     */
-    public PropertyPath (PropertyPath path) 
-    {
-        pathInfo = new LinkedList ();
-        pathInfo.addAll (path.pathInfo);
-    }
-    
-    /**
-     *  String array constructor.
-     *  This allows creation of a path in a common and simple
-     *  case:  a hierarchy of named subproperties. It's the
-     *  equivalent of creating an empty PropertyPath and then
-     *  calling addElement successively with each of the strings
-     *  in the array.
-     */
-    public PropertyPath (String[] pathArray)
-    {
-        pathInfo = new LinkedList ();
-        for (int i = 0; i < pathArray.length; i++) {
-            pathInfo.add (pathArray[i]);
-        }
-    }
-
-    /**
-     *  Adds a property name to the path.
-     */
-    public void addPropertyName (String str)
-    {
-        pathInfo.add (str);
-        // Now -- how do we add a key and distinguish it from a 
-        // property name?  We could define an internal type for
-        // keys.  Do that for the moment and see what that leads
-        // to in retrieval.  Alternatively, it isn't needed because
-        // we can see that a property has arity Map.
-    }
-    
-    /**
-     *  Adds a key to the path, for a property map.
-     */
-    public void addPropertyKey (Object obj)
-    {
-        pathInfo.add (new PropertyKey (obj));
-    }
-    
-    /**
-     *  Adds an index to the path, for an indexed property.
-     */
-    public void addPropertyIndex (int idx)
-    {
-        pathInfo.add (new Integer (idx));
-    }
-    
-    /**
-     *   Walk down the path and return the specified Property.
-     *   
-     *   @param   info   The RepInfo object to search
-     * 
-     *   @return  The specified Property if found, otherwise null.
-     */
-    public Property locateProperty (RepInfo info)
-    {
-        return locateProperty (info, false);
-    }
-    
-
-    /**
-     *   Walk down the path and return the specified Property.
-     *   
-     *   @param   info   The RepInfo object to search
-     *   @param   trace  If <code>true</code>, write debugging information
-     *                   to standard output.
-     * 
-     *   @return  The specified Property if found, otherwise null.
-     */
-    public Property locateProperty (RepInfo info, boolean trace)
-    {
-        if (pathInfo.isEmpty ()) {
-            // An empty path can't reach any property
-            if (trace) {
-                System.out.println ("Empty property path");
-            }
-            return null;
-        }
-        Object obj = pathInfo.get(0);
-        if (!(obj instanceof String)) {
-            // The initial qualifier must be a property name
-            if (trace) {
-                System.out.println ("Not a property name");
-            }
-            return null;
-        }
-        String top = (String) obj;
-        if (trace) {
-            System.out.println ("Getting proprerty " + top);
-        }
-        Property prop = info.getProperty (top);
-        if (prop == null) {
-            // No property of that name in RepInfo
-            if (trace) {
-                System.out.println ("Property is null");
-            }
-            return null;
-        }
-        int pathLen = pathInfo.size ();
-        // Pass the CDR of the list to locateSubProperty.
-        return locateSubProperty (prop, pathInfo.subList (1, pathLen), trace);
-    }
-    
-    /* Recursive function for extracting a subproperty of a property. */
-    private Property locateSubProperty (Property property, List path, boolean trace)
-    {
-        // If there's nothing left of the path, we're done.
-        if (path.isEmpty ()) {
-            return property;
-        }
-        List cdr = path.subList (1, path.size());
-        PropertyArity arity = property.getArity ();
-        PropertyType type = property.getType ();
-        Object val = property.getValue ();
-        if (trace) {
-            System.out.println ("Property arity = " + arity + ", type = " + type);
-        }
-        // If the type isn't PROPERTY, then there are no subproperties.
-        if (type != PropertyType.PROPERTY) {
-            if (trace) {
-                System.out.println ("Not a property, type is " + type.toString ());
-            }
-            return null;
-        }
-        Object obj = path.get (0);
-
-        if (obj instanceof String) {
-            Iterator iter;
-            // Iterate through the property and see if any of the elements
-            // are Properties that match the name.  
-            String name = (String) obj;
-            if (trace) {
-                System.out.println ("Looking for subproperty " + name + 
-                    " arity= " + arity.toString ());
-            }
-            if (arity.equals (PropertyArity.SCALAR)) {
-                // There's just one shot at matching a scalar.
-                Property p = (Property) property.getValue ();
-                if (p.getName().equals (name)) {
-                    return locateSubProperty (p, cdr, trace);
-                }
-                else {
-                    return null;
-                }
-            }
-            else if (arity.equals (PropertyArity.ARRAY)) {
-                // We know it's an array of Properties, which saves much
-                // hair-tearing.
-                Property[] parray = (Property []) val;
-                for (int i = 0; i < parray.length; i++) {
-                    Property p = parray[i];
-                    if (p.getName ().equals (name)) {
-                        return locateSubProperty (p, cdr, trace);
-                    }
-                }
-                return null;
-            }
-            else if (arity.equals (PropertyArity.LIST)) {
-                iter = ((List) val).listIterator ();
-                return getIteratedSubProperty (iter, name, cdr, trace);
-            }
-            else if (arity.equals (PropertyArity.SET)) {
-                iter = ((Set) val).iterator ();
-                return getIteratedSubProperty (iter, name, cdr, trace);
-            }
-            else if (arity.equals (PropertyArity.MAP)) {
-                iter = ((Map) val).values().iterator();
-                return getIteratedSubProperty (iter, name, cdr, trace);
-            }
-            else {
-                // Should never happen, but keep compiler happy
-                //System.out.println ("Unknown arity");
-                return null;
-            }
-        }
-        else if (obj instanceof Integer) {
-            int idx = ((Integer) obj).intValue();
-            //System.out.println ("Property index = " + idx + ", arity= " + arity.toString ());
-            if (arity.equals (PropertyArity.LIST)) {
-                List propList = (List) val;
-                return locateSubProperty 
-                    ((Property) propList.get (idx), cdr, trace);
-            }
-            else if (arity.equals (PropertyArity.ARRAY)) {
-                Property[] propArr = (Property []) val;
-                return locateSubProperty (propArr[idx], cdr, trace);
-            }
-            else {
-                // Other arities are not indexable
-                return null;
-            }
-        }
-        else if (obj instanceof PropertyKey) {
-            // This is applicable only to a Map.
-            if (arity != PropertyArity.MAP) {
-                return null;
-            }
-            return null;   // I'm not sure this case is even meaningful
-        }
-        else {
-            // We should never get here
-            return null;
-        }
-    }
-    
-    /* Walk through an Iterator, whose elements are Properties,
-     * and return the subproperty by <code>path</code> of the first element
-     * whose name matches <code>name</code>.
-     */
-    private Property getIteratedSubProperty (Iterator iter, 
-                    String name, 
-                    List path,
-                    boolean trace)
-    {
-        while (iter.hasNext ()) {
-            Property p = (Property) iter.next ();
-            if (p.getName ().equals (name)) {
-                return locateSubProperty (p, path, trace);
-            }
-        }
-        return null;
-    }
-    
-    
-        
-    private class PropertyKey
-    {
-        public Object key;
-        
-        public PropertyKey (Object obj)
-        {
-            key = obj;
-        }
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/PropertyType.java

@@ -1,110 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003-2009 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class defines enumerated types for an Property of 
- *  some given content. 
- *  Applications will not create or modify PropertyTypes, but will
- *  use one of the predefined PropertyType instances 
- *  BOOLEAN, BYTE, CHARACTER, DATE, DOUBLE, FLOAT, INTEGER,
- *  LONG, OBJECT, PROPERTY, SHORT, STRING, RATIONAL, or
- *  NISOIMAGEMETADATA.
- *
- *  @see Property
- */
-public final class PropertyType
-    extends EnumerationType
-{
-    /**
-     *  Property type for a <code>Boolean</code> object, or a
-     *  <code>boolean</code> if the Arity is Array.
-     */
-    public static final PropertyType BOOLEAN = new PropertyType ("Boolean");
-    /**
-     *  Property type for a <code>Byte</code> object, or a <code>byte</code>
-     *  if the Arity is Array.
-     */
-    public static final PropertyType BYTE = new PropertyType ("Byte");
-    /**
-     *  Property type for a <code>Character</code> object, or a
-     *  <code>char</code> if the Arity is Array.
-     */
-    public static final PropertyType CHARACTER = new PropertyType("Character");
-    /**
-     *  Property type for a <code>Date</code> object.
-     */
-    public static final PropertyType DATE = new PropertyType ("Date");
-    /**
-     *  Property type for a <code>Double</code> object, or 
-     *a <code>double</code> if the Arity is Array.
-     */
-    public static final PropertyType DOUBLE = new PropertyType ("Double");
-    /**
-     *  Property type for a <code>Float</code> object, or a
-     *  <code>float</code> if the Arity is Array.
-     */
-    public static final PropertyType FLOAT = new PropertyType ("Float");
-    /**
-     *  Property type for an <code>Integer</code> object, or an
-     *  <code>integer</code> if the Arity is Array.
-     */
-    public static final PropertyType INTEGER = new PropertyType ("Integer");
-    /**
-     *  Property type for a <code>Long</code> object, or a
-     *  <code>long</code> if the Arity is Array.
-     */
-    public static final PropertyType LONG = new PropertyType ("Long");
-    /**
-     *  Property type for an <code>Object</code>.
-     */
-    public static final PropertyType OBJECT = new PropertyType ("Object");
-    /**
-     *  Property type for an <code>AESAudioMetadata</code>.
-     */
-    public static final PropertyType AESAUDIOMETADATA =
-	new PropertyType ("AESAudioMetadata");
-    /**
-     *  Property type for a <code>NisoImageMetadata</code>.
-     */
-    public static final PropertyType NISOIMAGEMETADATA =
-    new PropertyType ("NISOImageMetadata");
-    /**
-     *  Property type for a <code>TextMDMetadata</code>.
-     */
-    public static final PropertyType TEXTMDMETADATA =
-    new PropertyType ("TextMDMetadata");
-    /**
-     *  Property type for a <code>Property</code> object.
-     */
-    public static final PropertyType PROPERTY = new PropertyType ("Property");
-    /**
-     *  Property type for a <code>Short</code> object, or a
-     *  <code>short</code> if the Arity is Array.
-     */
-    public static final PropertyType SHORT = new PropertyType ("Short");
-    /**
-     *  Property type for a <code>String</code> object.
-     */
-    public static final PropertyType STRING = new PropertyType ("String");
-    /**
-     *  Property type for a <code>Rational</code> object.
-     */
-    public static final PropertyType RATIONAL = new PropertyType ("Rational");
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Applications will never create PropertyTypes directly.
-     **/
-    private PropertyType (String value)
-    {
-	super (value);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/RAFInputStream.java

@@ -1,261 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.*;
-
-/**
- * An InputStream layered on top of a RandomAccessFile.
- * This is useful for a Module which has requirements that
- * force it to use a RandomAccessFile, but is usually
- * accessed sequentially.
- * 
- * An RAFInputStream maintains its own position information
- * in the file, so multiple RAFInputStreams in the same file
- * will work without interference.  However, this class is
- * not thread-safe.
- * 
- * @author Gary McGath
- *
- */
-public class RAFInputStream extends InputStream {
-
-    /* The file on which the stream is based */
-    private RandomAccessFile _raf;
-    
-    /* Size of fileBuf */
-    private int fileBufSize;
-    
-    /* Buffer for reading from the file */
-    private byte[] fileBuf;
-    
-    /* Offset for reading next byte from filebuf */
-    private int fileBufPos;
-    
-    /* Number of valid bytes in fileBuf */
-    private int fileBufBytes;
-    
-    /* Position in file for next read from RandomAccessFile */
-    private long fileOffset;
-    
-    /* EOF flag */
-    boolean eof;
-    
-    /**
-     *  Constructor with default buffer size.
-     *  The stream starts at the current position of the
-     *  RandomAccessFile.
-     * 
-     *  @param   raf   The file on which the
-     *                 stream is to be based.
-     */
-    public RAFInputStream(RandomAccessFile raf) {
-        super();
-        _raf = raf;
-        fileBufSize = 65536;  // pick a size, any size
-        init ();
-    }
-
-
-    /**
-     *  Constructor with buffer size.
-     *  The stream starts at the current position of the
-     *  RandomAccessFile.
-     * 
-     *  @param   raf         The file on which the
-     *                       stream is to be based.
-     * 
-     *  @param   bufferSize  The buffer size to be used.
-     *                       If less than or equal to 0, the
-     *                       default buffer size is used.
-     */
-    public RAFInputStream(RandomAccessFile raf, int bufferSize) {
-        super();
-        _raf = raf;
-        fileBufSize = (bufferSize <= 0 ? 65536 : bufferSize);
-        init ();
-    }
-
-    private void init ()
-    {
-        fileBufBytes = 0;
-        fileBufPos = 0;
-        fileBuf = new byte[fileBufSize];
-        try {
-            fileOffset = _raf.getFilePointer ();
-        }
-        catch (IOException e) {}
-        eof = false;
-        
-    }
-    /**
-     *  Reads a single byte from the file.
-     */
-    public int read() throws IOException {
-        if (eof) {
-            return -1;
-        }
-        if (fileBufPos >= fileBufBytes) {
-            // Need to read another bufferful
-            _raf.seek (fileOffset);
-            fileBufBytes = _raf.read (fileBuf);
-            fileBufPos = 0;
-            if (fileBufBytes <= 0) {
-                // No more in file
-                eof = true;
-                return -1;
-            }
-            else {
-                fileOffset += fileBufBytes;
-            }
-        }
-        return ((int) fileBuf[fileBufPos++] & 0XFF);
-    }
-    
-    /**
-     * Reads some number of bytes from the input stream and
-     * stores them into the buffer array b. The number of
-     * bytes actually read is returned as an integer.
-     */
-    public int read (byte[] b) throws IOException
-    {
-        int bytesToRead = b.length;
-        int bytesRead = 0;
-        for (;;) {
-            // See how many bytes are available in fileBuf.
-            int fbAvail = fileBufBytes - fileBufPos;
-            if (fbAvail <= 0) {
-                // Need to read another bufferful
-                _raf.seek (fileOffset);
-                fileBufBytes = _raf.read (fileBuf);
-                fileBufPos = 0;
-                if (fileBufBytes <= 0) {
-                    // No more in file -- return what we have
-                    eof = true;
-                    return bytesRead;
-                }
-                fbAvail = fileBufBytes;
-                fileOffset += fileBufBytes;
-            }
-            if (fbAvail > bytesToRead) {
-                // We have more than enough bytes.
-                fbAvail = bytesToRead;
-            }
-            for (int i = 0; i < fbAvail; i++) {
-                b[bytesRead++] = fileBuf[fileBufPos++];
-                bytesToRead--;
-            }
-            if (bytesToRead == 0) {
-                return bytesRead;
-            }
-        }
-    }
-
-    /**
-     * Reads up to len bytes of data from the input stream 
-     * into an array of bytes. An attempt is made to read as 
-     * many as len bytes, but a smaller number may be read, 
-     * possibly zero. The number of bytes actually read is
-     * returned as an integer.
-     * 
-     */
-    public int read(byte[] b, int off, int len) throws IOException 
-    {
-        int bytesToRead = len;
-        int bytesRead = 0;
-        for (;;) {
-            // See how many bytes are available in fileBuf.
-            int fbAvail = fileBufBytes - fileBufPos;
-            if (fbAvail <= 0) {
-                // Need to read another bufferful
-                _raf.seek (fileOffset);
-                fileBufBytes = _raf.read (fileBuf);
-                fileBufPos = 0;
-                if (fileBufBytes <= 0) {
-                    // No more in file -- return what we have
-                    eof = true;
-                    return bytesRead;
-                }
-                fbAvail = fileBufBytes;
-                fileOffset += fileBufBytes;
-            }
-            if (fbAvail > bytesToRead) {
-                // We have more than enough bytes.
-                fbAvail = bytesToRead;
-            }
-            for (int i = 0; i < fbAvail; i++) {
-                b[off + bytesRead++] = fileBuf[fileBufPos++];
-                bytesToRead--;
-            }
-            if (bytesToRead == 0) {
-                return bytesRead;
-            }
-        }
-    }
-
-
-    /** Skips some number of bytes.
-     * 
-     *  @return  The number of bytes actually skipped.
-     */
-    public long skip (long n) throws IOException 
-    {
-        // If the range of the skip lies
-        // within the current buffer, we just adjust
-        // the buffer offset.
-        int bytesLeft = fileBufBytes - fileBufPos;
-        if (bytesLeft > n) {
-            fileBufPos += (int) n;
-        }
-        else {
-            // doesn't fit within the buffer.            
-            // Set up to seek to the new position.
-            //long curPos = _raf.getFilePointer ();
-            if (fileOffset + n - bytesLeft  > _raf.length ()) {
-                fileOffset = _raf.length ();
-            }
-            //seek (curPos + n - bytesLeft);
-            else {
-                fileOffset += n - bytesLeft;
-            }
-            fileBufBytes = 0;   // Invalidate current buffer
-        }
-        return n;
-    }
-    
-    
-    
-    /**
-     *  Returns the RandomAccessFile object.
-     */
-    public RandomAccessFile getRAF ()
-    {
-        return _raf;
-    }
-
-
-    /**  Positions the stream to a different point in the file.
-     *   This invalidates the buffer.
-     */
-    public void seek (long offset) throws IOException
-    {
-        _raf.seek (offset);
-        fileBufBytes = 0;
-        fileBufPos = 0;
-        eof = false;
-    }
-    
-    /**  Returns the current position in the file.  
-     *   What is reported is the position of the byte
-     *   in the file which was last extracted from
-     *   the buffer.
-     */
-    public long getFilePos () throws IOException
-    {
-        return _raf.getFilePointer() -
-                (fileBufBytes - fileBufPos);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/RFC1766Lang.java

@@ -1,92 +0,0 @@
-
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  Class encapsulating RFC-1766 language codes.
- */
-public final class RFC1766Lang 
-{
-
-    String _langCode;
-
-    /**
-     * Constructor. 
-     *
-     * @param   str	The ASCII string for the language code.
-     */
-    public RFC1766Lang (String str) 
-    {
-	_langCode = str;
-    }
-
-    /**
-     *  Returns the language code string. 
-     */
-    public String getLangCode () 
-    {
-	return _langCode;
-    }
-
-    /**
-     *  Returns <code>true</code> if the language code
-     *  string is syntactically compliant.
-     *  The primary tag must be either a two-letter code,
-     *  the letter i, or the letter x (case insensitive);
-     *  no checking is done against registry lists.
-     */
-    public boolean isSyntaxCorrect ()
-    {
-	int i;
-	if (_langCode == null) {
-	    return false;
-	}
-	char[] chrs = _langCode.toLowerCase().toCharArray();
-	char firstChar = '\0';
-
-	int ntags = 0;
-	int taglength = 0;
-	for (i = 0; i < chrs.length; i++) {
-	    char ch = chrs[i];
-	    if (i == 0) {
-		firstChar = ch;
-	    }
-	    if (!Character.isLetter (ch) && ch != '-') {
-		return false;
-	    }
-	    if (ch == '-') {
-		taglength = 0;
-
-		// If this is the primary tag, do some checks
-		if (ntags++ == 0) {
-		    if (taglength == 1) {
-			if (firstChar != 'i' && firstChar != 'x') {
-			    return false;
-			}
-			else if (taglength != 2) {
-			    return false;
-			}
-		    }
-		}
-	    }
-	    else {
-		taglength++;
-		if (taglength > 8) {
-		    return false;
-		}
-	    }
-	}
-	// A dangling hyphen at the end isn't allowed.
-	if (taglength == 0) {
-	    return false;
-	}
-
-	return true;
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/Rational.java

@@ -1,100 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class encapsulates a number which is defined as the ratio
- *  of two 32-bit unsigned integers, in accordance with the TIFF
- *  specification.  
- */
-public class Rational
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /** Numerator of ratio. */
-    private long _numerator;
-    /** Denominator of ratio. */
-    private long _denominator;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-	
-    /**
-     *  The arguments to this constructor are long in order to
-     *  represent all possible 32-bit unsigned integers.  Parameters
-     *  greater than 2 ^ 32 - 1 are not meaningful. 
-     *  @param numerator     numerator of the Rational value
-     *  @param denominator   denominator of the Rational value
-     */
-    public Rational (long numerator, long denominator)
-    {
-	_numerator = numerator;
-	_denominator = denominator;
-    }
-    
-    /**
-     *  The arguments to the int constructor are treated as
-     *  32-bit unsigned integers.   
-     *  @param numerator     numerator of the Rational value
-     *  @param denominator   denominator of the Rational value
-     */
-    public Rational (int numerator, int denominator)
-    {
-	_numerator = (long) numerator & 0XFFFFFFFF;
-	_denominator = (long) denominator & 0XFFFFFFFF;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     ******************************************************************/
-	
-    /**
-     *  Returns the Numerator property.
-     */
-    public long getNumerator ()
-    {
-	return _numerator;
-    }
-	
-    /**
-     *  Returns the Denominator property.
-     */
-    public long getDenominator()
-    {
-	return _denominator;
-    }
-
-    /**
-     *  Converts to a floating-point value (numerator/denominator).
-     *  May throw an ArithmeticException.
-     **/
-    public double toDouble ()
-    {
-	return ((double) _numerator / (double) _denominator);
-    }
-
-    /**
-     *  Converts to a long value (numerator/denominator).
-     *  May throw an ArithmeticException.
-     **/
-    public long toLong ()
-    {
-	return (long) ((double) _numerator / (double) _denominator);
-    }
-
-    /**
-     *	Represents the Rational as a String in the form of 
-     *  "numerator/denominator".
-     */	
-    public String toString ()
-    {
-	return Long.toString (_numerator) + "/" +
-	       Long.toString (_denominator);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/RepInfo.java

@@ -1,599 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003-2005 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.util.*;
-
-/**
- *  This class encapsulates representation information, as defined 
- *  by ISO/IEC 14721, about a content stream.
- *
- *  @see <a href="http://wwwclassic.ccsds.org/documents/pdf/CCSDS-650.0-B-1.pdf">ISO/IEC
- *       14721 (PDF)</a>
- */
-public class RepInfo implements Cloneable
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /** List of checksums. */
-    private List<Checksum> _checksum;
-
-    /** Consistency flag. */
-    private boolean _consistent;
-
-    /** Validity flag.  A ternary variable which can have a value
-     *  of TRUE, FALSE, or UNDETERMINED. */
-    private int _valid;
-    
-    /** Values for _valid */
-    public final static int
-        TRUE = 1,
-        FALSE = 0,
-        UNDETERMINED = -1;
-
-    /** Creation date. */
-    private Date _created;
-
-    /** External representation information. */
-    private RepInfo _external;
-
-    /** Format identifier. */
-    private String _format;
-
-    /** Modification date. */
-    private Date _lastModified;
-
-    /** List of diagnostic and informative messages. */
-    private List<Message> _message;
-
-    /** MIME media type. */
-    private String _mimeType;
-
-    /** The module used to populate this representation information. */
-    private Module _module;
-
-    /** List of conforming format profiles. */
-    private List<String> _profile;
-    
-    /** List of modules for which signature matches. */
-    private List<String> _sigMatch;
-
-    /** Associative map of module-specific representation information. */
-    private Map<String, Property> _property;
-
-    /** Object size. */
-    private long _size;
-
-    /** Object file pathname or URI. */
-    private String _uri;
-    
-    /** Flag indicating _uri is a URL if true. */
-    private boolean _urlFlag;
-
-    /** Well-formed flag. A ternary variable which can have a value
-     *  of TRUE, FALSE, or UNDETERMINED. */
-    private int _wellFormed;
-
-    /** Version of format which applies. */
-    private String _version;
-
-    /** Note. */
-    private String _note;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     *  Creates a RepInfo with a URI reference
-     *
-     *  @param uri   Object file pathname or URI
-     */
-    public RepInfo (String uri)
-    {
-	init (uri);
-    }
-
-    /**
-     *  Creates a RepInfo with a URI reference and an external RepInfo.
-     * 
-     *  By default, urlFlag is <code>false</code>.
-     *
-     *  @param uri       Object file pathname or URI
-     *  @param external  External representation information
-     */
-    public RepInfo (String uri, RepInfo external)
-    {
-	init (uri);
-	_external = external;
-    }
-
-    private void init (String uri)
-    {
-        _uri = uri;
-        _size = -1;
-        _wellFormed = TRUE;
-        _consistent = true;
-        _urlFlag = false;
-        _valid = TRUE;
-        
-        _checksum = new ArrayList<Checksum> ();
-        _message  = new ArrayList<Message> ();
-        _profile  = new ArrayList<String> ();
-        _property = new TreeMap<String, Property> ();
-        _sigMatch = new ArrayList<String> ();
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     ******************************************************************/
-
-    /**
-     *  Clones the RepInfo one level deep, making fresh copies
-     *  of the checksum, message, profile, signature match, 
-     *  and property fields.
-     *  The external RepInfo (if any) is not cloned, but
-     *  is attached directly to the clone.
-     */
-    public Object clone () 
-    {
-	RepInfo newri;
-	try {
-	    newri = (RepInfo) super.clone ();
-	}
-	catch (CloneNotSupportedException e) {
-	    return null;   // should never happen
-	}
-
-        newri._checksum = new ArrayList<Checksum> (_checksum);
-        newri._message = new ArrayList<Message>(_message);
-        newri._profile = new ArrayList<String> (_profile);
-        newri._sigMatch = new ArrayList<String> (_sigMatch);
-        newri._property = new TreeMap<String, Property> (_property);
-        
-        return (Object) newri;
-    }
-
-    /**
-     *  Copies all the information out of the parameter object.
-     *  This is a "shallow" copy; it is assumed that the parameter
-     *  object is a temporary one that will not be further modified.
-     */
-    public void copy (RepInfo info)
-    {
-        _checksum = info._checksum;
-        _consistent = info._consistent;
-        _created = info._created;
-        _external = info._external;
-        _format = info._format;
-        _lastModified = info._lastModified;
-        _message = info._message;
-        _mimeType = info._mimeType;
-        _profile = info._profile;
-        _property = info._property;
-        _size = info._size;
-        _uri = info._uri;
-        _urlFlag = info._urlFlag;
-        _wellFormed = info._wellFormed;
-        _valid = info._valid;
-        _version = info._version;
-        _note = info._note;
-        _module = info._module;
-        _sigMatch = info._sigMatch;
-    }
-
-    /******************************************************************
-     *
-     * Accessor methods.
-     ******************************************************************/
-
-    /**
-     *   Returns this object's list of Checksums
-     */
-    public List<Checksum> getChecksum ()
-    {
-        return _checksum;
-    }
-
-    /**
-     *   Returns the creation date stored in this object. A creation
-     *   date is not automatically generated, but must be explicitly
-     *   stored.
-     **/
-    public Date getCreated ()
-    {
-        return _created;
-    }
-
-    /**
-     *   Return the format identifier
-     */
-    public String getFormat ()
-    {
-        return _format;
-    }
-
-    /**
-     *   Returns the last modified date stored in this object. A
-     *   date is not automatically generated, but must be explicitly
-     *   stored.
-     **/
-    public Date getLastModified ()
-    {
-        return _lastModified;
-    }
-
-    /**
-     *  Returns the message list stored in this object
-     */
-    public List<Message> getMessage ()
-    {
-        return _message;
-    }
-
-    /**
-     *  Returns the MIME type string stored in this object
-     */
-    public String getMimeType ()
-    {
-        return _mimeType;
-    }
-
-    /**
-     * Return the module.
-     */
-    public Module getModule ()
-    {
-        return _module;
-    }
-
-    /**
-     *  Returns the list of profiles (Strings) stored in this object
-     */
-    public List<String> getProfile ()
-    {
-        return _profile;
-    }
-
-    /**
-     *  Returns the Property map stored in this object.  The
-     *  Property map contains key-value pairs whose key is a 
-     *  <code>String</code> and whose value is a <code>Property</code>.
-     */
-    public Map<String, Property> getProperty ()
-    {
-        return _property;
-    }
-
-    /**
-     *  Returns a named Property from the Property map
-     *
-     *  @param name  The name of the Property.
-     */
-    public Property getProperty (String name)
-    {
-        Property property = null;
-        if (_property.size () > 0) {
-            property = (Property) _property.get (name);
-        }
-
-	return property;
-    }
-
-    /**
-     *  Returns the size property stored in this object.
-     */
-    public long getSize ()
-    {
-        return _size;
-    }
-
-    /**
-     *  Returns the URI property stored in this object.
-     */
-    public String getUri ()
-    {
-        return _uri;
-    }
-
-    /**
-     *  Returns a flag which, if <code>true</code>, indicates
-     *  the object is a URL.
-     */
-    public boolean getURLFlag ()
-    {
-        return _urlFlag;
-    }
-
-    /**
-     *  Returns the value of the consistency flag.
-     */
-    public boolean isConsistent ()
-    {
-        return _consistent;
-    }
-
-    /**
-     *  Returns the value of the well-formed flag.
-     *  Can return TRUE, FALSE, or UNDETERMINED.
-     */
-    public int getWellFormed ()
-    {
-        return _wellFormed;
-    }
-
-    /**
-     *  Returns the value of the validity flag.
-     *  Can return TRUE, FALSE, or UNDETERMINED.
-     */
-    public int getValid ()
-    {
-        return _valid;
-    }
-
-    /**
-     *  Returns the version property stored in this object
-     */
-    public String getVersion ()
-    {
-	return _version;
-    }
-
-    /**
-     *  Returns the note property stored in this object
-     */
-    public String getNote ()
-    {
-	return _note;
-    }
-    
-    /**
-     *  Returns the list of matching signatures.  
-     *  JhoveBase will make this value persistent across
-     *  module invocations for a given document, so the list
-     *  returned will reflect all modules that have looked
-     *  at the document so far.
-     */
-    public List<String> getSigMatch ()
-    {
-        return _sigMatch;
-    }
-
-    /**
-     * Return property by name, regardless of its position in the
-     * property hierarchy.
-     * @param name Property name
-     * @return Named property (or null)
-     */
-    public Property getByName (String name)
-    {
-        Property prop = null;
-
-        Collection<Property> coll = _property.values ();
-        Iterator<Property> iter = coll.iterator ();
-        while (iter.hasNext ()) {
-            prop = (Property) iter.next ();
-            if ((prop = prop.getByName (name)) != null) {
-                break;
-            }
-        }
-
-        return prop;
-    }
-
-    /******************************************************************
-     * Mutator methods.
-     ******************************************************************/
-
-    /**
-     *  Append a Checksum object to the checksum list.
-     */
-    public void setChecksum (Checksum checksum)
-    {
-        _checksum.add (checksum);
-    }
-
-    /**
-     *  Set the value of the consistency flag
-     */
-    public void setConsistent (boolean consistent)
-    {
-	_consistent = consistent;
-    }
-
-    /**
-     *  Set the creation date
-     */
-    public void setCreated (Date created)
-    {
-	_created = created;
-    }
-
-    /**
-     *  Set the format identifier
-     */
-    public void setFormat (String format)
-    {
-	_format = format;
-    }
-
-    /**
-     *  Set the last modified date
-     */
-    public void setLastModified (Date lastModified)
-    {
-        _lastModified = lastModified;
-    }
-
-    /**
-     *  Append a Message object to the message list
-     */
-    public void setMessage (Message message)
-    {
-        _message.add (message);
-    }
-
-    /**
-     *  Set the MIME type string
-     */
-    public void setMimeType (String mimeType)
-    {
-        _mimeType = mimeType;
-    }
-
-    /**
-     * Add the module.
-     */
-    public void setModule (Module module)
-    {
-        _module = module;
-    }
-
-    /**
-     *  Append a profile String to the profile list
-     */
-    public void setProfile (String profile)
-    {
-        _profile.add (profile);
-    }
-
-    /**
-     *   Add a Property to the property map.  The name of the Property
-     *   becomes its key in the map.
-     */
-    public void setProperty (Property property)
-    {
-        _property.put (property.getName (), property);
-    }
-
-    /**
-     *  Set the size property
-     */
-    public void setSize (long size)
-    {
-        _size = size;
-    }
-    
-    /**
-     *  Set the flag to indicate whether this is a URL (true)
-     *  or a file (false)
-     */
-    public void setURLFlag (boolean flag)
-    {
-        _urlFlag = flag;
-    }
-
-    /**
-     *  Set the well-formed flag
-     * 
-     *  @param wellFormed    Boolean argument that maps to
-     *                  an integer value:
-     *                  true maps to TRUE, and false to FALSE.
-     */
-    public void setWellFormed (boolean wellFormed) 
-    {
-        _wellFormed = wellFormed ? TRUE : FALSE;
-        if (!wellFormed) {
-            _consistent = false;
-            _valid = FALSE;
-        }
-    }
-
-    /**
-     *  Set the wellFormed flag.
-     *  Setting wellFormed to false forces the consistent and
-     *  valid flags to be false as well.
-     */
-    public void setWellFormed (int wellFormed)
-    {
-        _wellFormed = wellFormed;
-	if (wellFormed == FALSE) {
-	    _consistent = false;
-	    _valid = FALSE;
-	}
-        if (wellFormed == UNDETERMINED) {
-            _valid = UNDETERMINED;
-        }
-    }
-
-    /**
-     *  Set the validity flag
-     * 
-     *  @param valid    Boolean argument that maps to
-     *                  an integer value:
-     *                  true maps to TRUE, and false to FALSE.
-     */
-    public void setValid (boolean valid) 
-    {
-        _valid = valid ? TRUE : FALSE;
-    }
-
-    /**
-     *  Set the validity flag
-     * 
-     *  @param valid    Permitted values are TRUE, FALSE, AND
-     *                  UNDETERMINED.  The effect of using 
-     *                  other values is undefined.
-     */
-    public void setValid (int valid) 
-    {
-        _valid = valid;
-    }
-
-    /**
-     *  Set the version string
-     */
-    public void setVersion (String version) 
-    {
-        _version = version;
-    }
-
-    /**
-     *  Set the note string
-     */
-    public void setNote (String note)
-    {
-	_note = note;
-    }
-    
-    /** Adds the name of a module, signifying that the document
-     *  signature matched the module's requirements.
-     *  JhoveBase will make this value persistent across
-     *  module invocations for a given document.
-     */
-    public void setSigMatch (String modname)
-    {
-        _sigMatch.add (modname);
-    }
-    
-    /** Adds a list of module names, signifying that the document
-     *  signature matched the module's requirements.
-     *  Any previous list is lost.
-     *  JhoveBase will make this value persistent across
-     *  module invocations for a given document.
-     */
-    public void setSigMatch (List<String> modnames)
-    {
-        _sigMatch = modnames;
-    }
-
-    /******************************************************************
-     * Serialization methods.
-     ******************************************************************/
-
-    /**
-     *  Output the information in this object.  The format and 
-     *  destination of the output are determined by the
-     *  OutputHandler.
-     */
-    public void show (OutputHandler handler)
-    {
-	handler.analyze (this);
-	handler.show    (this);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/Signature.java

@@ -1,157 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-/**
- *  This class encapsulates information about format signatures,
- *   both internal and external.
- *   The value of a Signature may be either a String or a byte array
- *   (stored as an int array to avoid signed byte problems).
- */
-public abstract class Signature
-{
-    private int[] _value;
-    private String _stringValue;
-    private SignatureType _type;
-    private SignatureUseType _use;
-    private String _note;
-
-    /**
-     *  A Signature cannot be created directly; this constructor
-     *  can be called as the superclass constructor from a subclass.
-     *  This constructor uses a String value.
-     */
-    protected Signature (String value, SignatureType type,
-             SignatureUseType use)
-    {
-    this (new int[value.length ()], type, use);
-    int len = value.length ();
-    _stringValue = value;
-    for (int i = 0; i < len; i++) {
-        _value[i] = value.charAt(i);
-    }
-    }
-
-    /**
-     *  A Signature cannot be created directly; this constructor
-     *  can be called as the superclass constructor from a subclass.
-     *  This constructor uses a byte array (stored as an int array) value.
-     */
-    protected Signature (int[] value, SignatureType type,
-             SignatureUseType use)
-    {
-    _value = value;
-    _type  = type;
-    _use   = use;
-    _stringValue = null;
-    }
-
-    /**
-     *  A Signature cannot be created directly; this constructor
-     *  can be called as the superclass constructor from a subclass.
-     *  This constructor uses a String value and allows specification
-     *  of a note.
-     */
-    protected Signature (String value, SignatureType type,
-             SignatureUseType use,
-             String note)
-    {
-    this (new int[value.length ()], type, use, note);
-    int len = value.length ();
-    for (int i = 0; i < len; i++) {
-        _value[i] = value.charAt(i);
-    }
-    _stringValue = value;
-    }
-
-    /**
-     *  A Signature cannot be created directly; this constructor
-     *  can be called as the superclass constructor from a subclass.
-     *  This constructor uses a byte array (stored as an int array) value
-     *  and allows specification of a note.
-     */
-    protected Signature (int[] value, SignatureType type,
-             SignatureUseType use,
-             String note)
-    {
-    this (value, type, use);
-    _note = note;
-    }
-
-    /**
-     *  Returns the type of this Signature
-     */
-    public SignatureType getType ()
-    {
-    return _type;
-    }
-
-    /**
-     *  Returns the use requirement for this Signature
-     */
-    public SignatureUseType getUse ()
-    {
-    return _use;
-    }
-
-    /**
-     *  Returns the byte array value for this Signature.
-     *  If this Signature was constructed from a String, it
-     *  returns the characters of the String as the bytes of
-     *  the array.
-     */
-    public int[] getValue ()
-    {
-    return _value;
-    }
-
-    /**
-     *  Returns the note specified for this Signature, or null
-     *  if no note was specified.
-     */
-    public String getNote ()
-    {
-    return _note;
-    }
-
-    /**
-     *  Returns true if this Signature's value was provided as a
-     *  String, false if as an array.
-     */
-    public boolean isStringValue ()
-    {
-    return (_stringValue != null);
-    }
-
-    /**
-     *  Returns the string value of this Signature.  Returns null
-     *  if this Signature was constructed with an array.
-     */
-    public String getValueString ()
-    {
-    return _stringValue;
-    }
-
-    /**
-     *  Returns the value of this Signature as a hexadecimal string.
-     *  The length of the string is twice the length of the array
-     *  or string from which this Signature was created, and all
-     *  alphabetic characters are lower case.  
-     */
-    public String getValueHexString ()
-    {
-    StringBuffer valBuf = new StringBuffer ("0x");
-    for (int i = 0; i < _value.length; i++) {
-        /* Make each byte exactly two digits */
-        int b = _value[i];
-        if (b < 16) {
-        valBuf.append ('0');
-        }
-        valBuf.append (Integer.toHexString (b));
-    }
-    return valBuf.toString ();
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/SignatureType.java

@@ -1,54 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class defines enumerated types for a Signature in a module. 
- *  Applications will not create or modify SignatureTypes, but will
- *  use one of the predefined SignatureType instances 
- *  EXTENSION, FILETYPE, or MAGIC.
- *
- *  @see Signature
- */
-public final class SignatureType
-    extends EnumerationType
-{
-    /******************************************************************
-     * PUBLIC STATIC INSTANCES.
-     ******************************************************************/
-
-    /** 
-     *  Signature type for a file extension, i.e., a sequence of
-     *  characters following a period character in a file name.
-     */
-    public static final SignatureType EXTENSION =
-	            new SignatureType ("File extension");
-
-    /** 
-     *  Signature type for a Macintosh OS file type. This applies
-     *  only to Mac OS files, and is always a four-character code.
-     */
-    public static final SignatureType FILETYPE =
-	            new SignatureType ("Mac OS file type");
-    /** 
-     *  Signature type for a "magic number" stored in the file.
-     */
-    public static final SignatureType MAGIC =
-	            new SignatureType ("Magic number");
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Applications will never create SignatureTypes directly.
-     **/
-    private SignatureType (String value)
-    {
-	super (value);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/SignatureUseType.java

@@ -1,55 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-/**
- *  This class defines enumerated use types for a Signature in a module. 
- *  These give information on whether a signature is required in
- *  valid content.
- *  Applications will not create or modify SignatureUseTypes, but will
- *  use one of the predefined SignatureUseType instances 
- *  MANDATORY, MANDATORY_IF_APPLICABLE, or OPTIONAL.
- *
- *  @see Signature
- */
-public final class SignatureUseType
-    extends EnumerationType
-{
-    /******************************************************************
-     * PRIVATE CLASS FIELDS.
-     ******************************************************************/
-
-    /** 
-     *  Use type for a required signature.
-     */
-    public static final SignatureUseType MANDATORY =
-	            new SignatureUseType ("Mandatory");
-
-
-    /** 
-     *  Use type for a conditionally required signature.
-     */
-    public static final SignatureUseType MANDATORY_IF_APPLICABLE =
-	            new SignatureUseType ("Mandatory if applicable");
-    /**
-     *  Use type for an optional signature.
-     */
-    public static final SignatureUseType OPTIONAL =
-	            new SignatureUseType ("Optional");
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /** 
-     *  Applications will never create SignatureUseTypes directly.
-     **/
-    private SignatureUseType (String value)
-    {
-	super (value);
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/TextMDMetadata.java

@@ -1,438 +0,0 @@
-package edu.harvard.hul.ois.jhove;
-
-import java.nio.charset.Charset;
-import java.util.Arrays;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.Locale;
-import java.util.Map;
-import java.util.Set;
-
-/**
- * Encapsulation of the textMD metadata for text files.
- * See http://www.loc.gov/standards/textMd for more information.
- *
- * @author Thomas Ledoux
- *
- */
-public class TextMDMetadata {
-	/**
-	 * textMD namespace and version
-	 */
-	public static final String NAMESPACE = "info:lc/xmlns/textMD-v3";
-    public static final String DEFAULT_LOCATION = 
-        "http://www.loc.gov/standards/textMD/textMD-v3.01a.xsd";
-	public static final String VERSION = "3.0";
-	
-	/**
-     *  Uses enumerated values of 'big', 'little', and 'middle' endian. 
-     */
-	public static final String[] BYTE_ORDER = { 
-		"big", "little", "middle" 
-	};
-    public static final int BYTE_ORDER_BIG = 0;
-    public static final int BYTE_ORDER_LITTLE = 1;
-    public static final int BYTE_ORDER_MIDDLE= 2;
-    
-    /**
-     *  Uses enumerated values of 'CR', 'LF' and 'CR/LF' for the idenntification of the linebreak. 
-     */
-	public static final String[] LINEBREAK = { 
-		"CR", "LF", "CR/LF" 
-	};
-    public static final int LINEBREAK_CR = 0;
-    public static final int LINEBREAK_LF = 1;
-    public static final int LINEBREAK_CRLF = 2;
-   
-    /**
-     * Array of textMD charsets unknown by java.nio.charset.Charsets
-     */
-    protected static final String[] UNKNOWN_JAVA_CHARSET =
-            new String[] { 
-                    "ISO-10646-UTF-1", "ISO_646.basic:1983", "INVARIANT", "BS_4730", "NATS-SEFI",
-                    "NATS-SEFI-ADD", "NATS-DANO", "NATS-DANO-ADD", "SEN_850200_B", "SEN_850200_C", "ISO-2022-CN-EXT",
-                    "JIS_C6220-1969-jp", "JIS_C6220-1969-ro", "IT", "PT", "ES", "greek7-old", "latin-greek",
-                    "DIN_66003", "NF_Z_62-010_(1973)", "latin-greek-1", "ISO_5427", "JIS_C6226-1978", "BS_viewdata",
-                    "INIS", "INIS-8", "INIS-cyrillic", "ISO_5427:1981", "ISO_5428:1980", "GB_1988-80", "GB_2312-80",
-                    "NS_4551-1", "NS_4551-2", "NF_Z_62-010", "videotex-suppl", "PT2", "ES2", "MSZ_7795.3", "greek7",
-                    "ASMO_449", "iso-ir-90", "JIS_C6229-1984-a", "JIS_C6229-1984-b", "JIS_C6229-1984-b-add",
-                    "JIS_C6229-1984-hand", "JIS_C6229-1984-hand-add", "JIS_C6229-1984-kana", "ISO_2033-1983",
-                    "ANSI_X3.110-1983", "T.61-7bit", "ECMA-cyrillic", "CSA_Z243.4-1985-1", "CSA_Z243.4-1985-2",
-                    "CSA_Z243.4-1985-gr", "ISO_8859-6-E", "ISO_8859-6-I", "T.101-G2", "ISO_8859-8-E", "ISO_8859-8-I",
-                    "CSN_369103", "JUS_I.B1.002", "ISO_6937-2-add", "IEC_P27-1", "JUS_I.B1.003-serb",
-                    "JUS_I.B1.003-mac", "greek-ccitt", "NC_NC00-10:81", "ISO_6937-2-25", "GOST_19768-74",
-                    "ISO_8859-supp", "ISO_10367-box", "ISO-8859-10", "latin-lap", "DS_2089", "us-dk", "dk-us",
-                    "KSC5636", "ISO-10646-UCS-4", "DEC-MCS", "hp-roman8", "macintosh", "IBM038", "IBM274", "IBM275",
-                    "IBM281", "IBM290", "IBM423", "IBM851", "IBM880", "IBM891", "IBM903", "IBM904", "IBM905",
-                    "EBCDIC-AT-DE", "EBCDIC-AT-DE-A", "EBCDIC-CA-FR", "EBCDIC-DK-NO", "EBCDIC-DK-NO-A", "EBCDIC-FI-SE",
-                    "EBCDIC-FI-SE-A", "EBCDIC-FR", "EBCDIC-IT", "EBCDIC-PT", "EBCDIC-ES", "EBCDIC-ES-A", "EBCDIC-ES-S",
-                    "EBCDIC-UK", "EBCDIC-US", "UNKNOWN-8BIT", "MNEMONIC", "MNEM", "VISCII", "VIQR", "IBM00924",
-                    "UNICODE-1-1", "SCSU", "UTF-7", "CESU-8", "UNICODE-1-1-UTF-7", "ISO-8859-14", "ISO-8859-16",
-                    "Extended_UNIX_Code_Fixed_Width_for_Japanese", "ISO-10646-UCS-Basic", "ISO-10646-Unicode-Latin1",
-                    "ISO-10646-J-1", "ISO-Unicode-IBM-1268", "ISO-Unicode-IBM-1276", "ISO-Unicode-IBM-1264",
-                    "ISO-Unicode-IBM-1265", "ISO-8859-1-Windows-3.0-Latin-1", "ISO-8859-1-Windows-3.1-Latin-1",
-                    "ISO-8859-2-Windows-Latin-2", "ISO-8859-9-Windows-Latin-5", "Adobe-Standard-Encoding",
-                    "Ventura-US", "Ventura-International", "PC8-Danish-Norwegian", "PC8-Turkish", "IBM-Symbols",
-                    "HP-Legal", "HP-Pi-font", "HP-Math8", "Adobe-Symbol-Encoding", "HP-DeskTop", "Ventura-Math",
-                    "Microsoft-Publishing", "HZ-GB-2312", };
-    /**
-     * Set of unknown charsets in Java
-     */
-    protected static Set setOfUnknownJavaCharset;
-    
-    /**
-     * Map from ISO 639/2 T to ISO 639/2 B
-     */
-    protected static Map<String, String> fromISO_639_2_T2B;
-    
-	public static final String CHARSET_ASCII = "US-ASCII";
-	public static final String CHARSET_UTF8 = "UTF-8";
-	public static final String CHARSET_ISO8859_1 = "ISO-8859-1";
-
-	/**
-     * To represent the unknown
-	 */ 
-	public static final int NILL = -1;
-	
-    static {
-        setOfUnknownJavaCharset = new HashSet(Arrays.asList(UNKNOWN_JAVA_CHARSET));
-        
-        // Map to transform from the terminology code to the bibliographic one 
-        fromISO_639_2_T2B = new HashMap<String, String>();
-        fromISO_639_2_T2B.put("sqi", "alb");
-        fromISO_639_2_T2B.put("hye", "arm");
-        fromISO_639_2_T2B.put("eus", "baq");
-        fromISO_639_2_T2B.put("mya", "bur");
-        fromISO_639_2_T2B.put("zho", "chi");
-        fromISO_639_2_T2B.put("ces", "cze");
-        fromISO_639_2_T2B.put("nld", "dut");
-        fromISO_639_2_T2B.put("fra", "fre");
-        fromISO_639_2_T2B.put("kat", "geo");
-        fromISO_639_2_T2B.put("deu", "ger");
-        fromISO_639_2_T2B.put("ell", "gre");
-        fromISO_639_2_T2B.put("isl", "ice");
-        fromISO_639_2_T2B.put("mkd", "mac");
-        fromISO_639_2_T2B.put("mri", "mao");
-        fromISO_639_2_T2B.put("msa", "may");
-        fromISO_639_2_T2B.put("fas", "per");
-        fromISO_639_2_T2B.put("ron", "rum");
-        fromISO_639_2_T2B.put("slk", "slo");
-        fromISO_639_2_T2B.put("bod", "tib");
-        fromISO_639_2_T2B.put("cym", "wel");
-    }
-    
-	/**
-	charset
-	    Usage: The character set employed by the text. Controlled vocab using IANA names for character sets.
-	    Attributes: none.
-	    Contains: none.
-	    Contained by: character_info.
-   */
-	private String charset;
-
-	/**
- 	byte_order
-	    Usage: Byte order, primarily useful for cases where it's not clear just by specifying an IANA character set. 
-	    Uses enumerated values of big, little, and middle' endian.
-	    Attributes: none.
-	    Contains: none.
-	    Contained by: character_info.
-	*/
-	private int byte_order = NILL;
-
-	/**
-	byte_size
-	    Usage: The size of an individual byte within the expressed as a number of bits (as integer). This does not necessarily equal the character size, as a character may have more than one, or a variable number of bytes per character.
-	    Attributes: none.
-	    Contains: none.
-	    Contained by: character_info.
-	*/
-	private String byte_size;
-    
-	/**
-	character_size
-	    Usage: The size of an individual character within the character set as a number of bytes of the size expressed in the byte_size. In the case of variable encodings, such as UTF-8 for Unicode, the character_size element should state "variable" and also identify the specific variable character set encoding in the encoding attribute.
-	    Attributes: encoding.
-	    Contains: none.
-	    Contained by: character_info.
-	 */
-	private String character_size;
-    
-	/**
-	linebreak
-	    Usage: How line breaks are represented in current file (which may differ from how they were originally encoded). Either carriage return, line feed, or carriage return/line feed.
-	    Attributes: none.
-	    Contains: none.
-	    Contained by: character_info. 
-	 */
-	private int linebreak = NILL;
-	
-	/**
-    language
-        Usage: Language(s) used in work. Use ISO 639-2 codes, which are enumerated in the schema as valid text values.
-        Attributes: none.
-        Contains: none.
-        Contained by: textMD.
-	 */
-	private String language;
-	
-	/**
-	markup_basis
-	    Usage: The metalanguage used to create the markup language, such as SGML, XML, GML, etc.
-	    Attributes: version.
-	    Contains: none.
-	    Contained by: textMD.
-	*/
-	private String markup_basis;
-	/**	
-	 version
-	    Usage: Used to record the version number (as a string) for a given piece of software, a markup language, or a schema version.
-	*/	
-	private String markup_basis_version;
-	
-	/**
-	markup_language
-	    Usage: Markup language employed on the text (i.e., the specific schema or dtd). May be a URI for schema or dtd, but not mandatory.
-	    Attributes: version.
-	    Contains: none.
-	    Contained by: textMD. 	
-	*/
-	private String markup_language;
-    
-	/**	
-	 version
-	    Usage: Used to record the version number (as a string) for a given piece of software, a markup language, or a schema version.
-	*/	
-	private String markup_language_version;
-    
-	/**
-	 * @return the charset
-	 */
-	public String getCharset() {
-		return charset;
-	}
-    
-	/**
-	 * @param charset the charset to set
-	 */
-	public void setCharset(String charset) {
-		this.charset = toTextMDCharset(charset);
-	}
-    
-	/**
-	 * @return the byte_order
-	 */
-	public int getByte_order() {
-		return byte_order;
-	}
-        public String getByte_orderString() {
-            if (byte_order == NILL) {
-                return BYTE_ORDER[BYTE_ORDER_BIG]; // default !!!
-            }
-            return BYTE_ORDER[byte_order];
-    }
-	
-	/**
-	 * @param byte_order the byte_order to set
-	 */
-	public void setByte_order(int byte_order) {
-		this.byte_order = byte_order;
-	}
-    
-	/**
-	 * @return the byte_size
-	 */
-	public String getByte_size() {
-		return byte_size;
-	}
-    
-	/**
-	 * @param byte_size the byte_size to set
-	 */
-	public void setByte_size(String byte_size) {
-		this.byte_size = byte_size;
-	}
-    
-	/**
-	 * @return the character_size
-	 */
-	public String getCharacter_size() {
-		return character_size;
-	}
-    
-	/**
-	 * @param character_size the character_size to set
-	 */
-	public void setCharacter_size(String character_size) {
-		this.character_size = character_size;
-	}
-    
-	/**
-	 * @return the linebreak
-	 */
-	public int getLinebreak() {
-		return linebreak;
-	}
-    
-    /**
-     * @return the linebreak in String form
-     */
-    public String getLinebreakString() {
-        if (linebreak == NILL) {
-            return LINEBREAK[LINEBREAK_CRLF]; // default !!!
-        }
-        return LINEBREAK[linebreak];
-    }
-    
-	/**
-	 * @param linebreak the linebreak to set
-	 */
-	public void setLinebreak(int linebreak) {
-		this.linebreak = linebreak;
-	}
-    
-	/**
-	 * @return the language
-	 */
-	public String getLanguage() {
-		return language;
-	}
-    
-	/**
-	 * @param language the language to set
-	 */
-	public void setLanguage(String language) {
-        this.language = toISO_639_2(language);
-	}
-    
-	/**
-	 * @return the markup_basis
-	 */
-	public String getMarkup_basis() {
-		return markup_basis;
-	}
-    
-	/**
-	 * @param markup_basis the markup_basis to set
-	 */
-	public void setMarkup_basis(String markup_basis) {
-		this.markup_basis = markup_basis;
-	}
-    
-	/**
-	 * @return the markup_basis_version
-	 */
-	public String getMarkup_basis_version() {
-		return markup_basis_version;
-	}
-    
-	/**
-	 * @param markup_basis_version the markup_basis_version to set
-	 */
-	public void setMarkup_basis_version(String markup_basis_version) {
-		this.markup_basis_version = markup_basis_version;
-	}
-    
-	/**
-	 * @return the markup_language
-	 */
-	public String getMarkup_language() {
-		return markup_language;
-	}
-    
-	/**
-	 * @param markup_language the markup_language to set
-	 */
-	public void setMarkup_language(String markup_language) {
-		this.markup_language = markup_language;
-	}
-    
-	/**
-	 * @return the markup_language_version
-	 */
-	public String getMarkup_language_version() {
-		return markup_language_version;
-	}
-    
-	/**
-	 * @param markup_language_version the markup_language_version to set
-	 */
-	public void setMarkup_language_version(String markup_language_version) {
-		this.markup_language_version = markup_language_version;
-	}
-    
-    /**
-     * Transform a given charset in the "authorized" list given in the textMD schema enumeration.
-     * From the schema documentation on charset (http://www.loc.gov/standards/textMD/elementSet/index.html#element_charset).
-     * The character set employed by the text. Controlled vocab using IANA names for character sets:
-     * http://www.iana.org/assignments/character-sets.
-     * The problem arises because the java Charset uses the (preferred MIME name) where textMD uses the Name ...
-     * @param srcCharset charset from the file
-     * @return normalized charset
-     */
-    public static String toTextMDCharset(String srcCharset) {
-        if (srcCharset == null) return null;
-        
-        Charset cs = null;
-        String textMDCharset = null;
-        try {
-            cs = Charset.forName(srcCharset);
-            textMDCharset = cs.name();
-        } catch (Exception e) {
-            // Try a unknown one
-            if (setOfUnknownJavaCharset.contains(srcCharset)) {
-                textMDCharset = srcCharset;
-            } else {
-                // Downgrade to default
-                textMDCharset = CHARSET_ISO8859_1;
-            }
-        }
-        if (textMDCharset != null) {
-            return textMDCharset;
-        } else {
-            // Downgrade to default
-            return CHARSET_ISO8859_1;
-        }
-    }
-    
-    /**
-     * Transform a language to the ISO_639-2 language (only enumeration allowed in textMD schema).
-     * @param srcLang language in the file
-     * @return normalized language in 3 letters (except qaa-qtz)
-     */
-    public static String toISO_639_2(String srcLang) {
-        if (srcLang == null) return null;
-        if ("qaa-qtz".equals(srcLang)) return srcLang;
-        
-        String textMDLang = null;
-        if (srcLang.length() == 3) {
-            textMDLang = srcLang;
-        }
-        else if (srcLang.length() == 2) {
-            try {
-                Locale loc = new Locale(srcLang);
-                textMDLang = loc.getISO3Language();
-            } catch (Exception e) {
-                // Unknown language
-            }
-        }
-        else if (srcLang.length() > 3) {
-            // Just try with the first 2 characters
-            try {
-                Locale loc = new Locale(srcLang.substring(0, 2));
-                srcLang = loc.getISO3Language();
-            } catch (Exception e) {
-                // Unknown language
-            }
-        }
-        if (textMDLang != null && textMDLang.length() == 3) {
-            // From ISO 639-2/T to ISO 639-2/B
-            if (fromISO_639_2_T2B.containsKey(textMDLang)) {
-                textMDLang = (String)fromISO_639_2_T2B.get(textMDLang);
-            }
-            return textMDLang;
-        }
-        return null;
-
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/Utf8BlockMarker.java

@@ -1,62 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2004 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import edu.harvard.hul.ois.jhove.module.Utf8Block;
-import java.util.*;
-
-/**
- *
- * @author Gary McGath
- *
- */
-public class Utf8BlockMarker {
-    private boolean[] blocksUsed;
-
-    public Utf8BlockMarker () {
-        blocksUsed = new boolean [Utf8Block.unicodeBlock.length];
-    }
-
-    public void markBlock (int code) {
-        for (int i=0; i<Utf8Block.unicodeBlock.length; i++) {
-            if (Utf8Block.unicodeBlock[i].getStart () <= code &&
-            Utf8Block.unicodeBlock[i].getEnd   () >= code) {
-                blocksUsed[i] = true;
-                break;
-            }
-        }
-    }
-
-    /** Returns a Property listing the blocks that have been 
-     *  marked as used.  If no blocks have been marked,
-     *  returns null. */
-    public Property getBlocksUsedProperty (String name)
-    {  
-        List<String> block = new ArrayList<String> (blocksUsed.length);
-        for (int i=0; i<blocksUsed.length; i++) {
-            if (blocksUsed[i]) {
-            block.add (Utf8Block.unicodeBlock[i].getName ());
-            }
-        }
-        if (block.isEmpty ()) {
-            return null;
-        }
-        else {
-            return new Property (name,
-                PropertyType.STRING,
-                PropertyArity.LIST,
-                block);
-        }
-    }
-
-    /** Clears all marked blocks. */
-    public void reset ()
-    {
-        for (int i=0; i<Utf8Block.unicodeBlock.length; i++) {
-            blocksUsed[i] = false;
-        }
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/XMLWrapperStream.java

@@ -1,161 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- *
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-import java.io.IOException;
-import java.io.InputStream;
-
-/**
- * This class serves to provide an InputStream for an XML
- * fragment (e.g., embedded XMP metadata).  
- * 
- * @author Gary McGath
- */
-public class XMLWrapperStream extends InputStream 
-{
-    
-    private String xmlDecl;
-    private String rootStart;
-    private String rootEnd;
-    private int strIndex;
-    private int state;
-
-    /* Values for state */    
-    private final static int DECL = 0,
-        ROOT_START = 1,
-        CONTENT = 2,
-        ROOT_END = 3;
-
-    private InputStream _wrappedStream;
-
-    /**
-     *  Constructor.
-     *  
-     *  @param wrappedStream       The stream which this stream will subsume.
-     *  @param rootName            The name of the root element.  May be null 
-     *                             if <code>wrappedStream</code> already contains a root element.
-     *  @param version             The XML version.  Should be null or "1.0" unless 
-     *                             there's a really good reason.
-     *  @param encoding            The name of the character encoding. May be null.
-     *  @param standalone          The value of the <code>standalone</code> attribute.  May be null.
-     */
-    public XMLWrapperStream (InputStream wrappedStream, 
-            String rootName,
-            String version,
-            String encoding,
-            String standalone) 
-    {
-        _wrappedStream = wrappedStream;
-        xmlDecl = "<?xml version='";
-        if (version == null) {
-            xmlDecl += "1.0'";   
-        }
-        else {
-            xmlDecl += version + "'";
-        }
-        if (encoding != null) {
-            xmlDecl += " encoding='" + encoding + "' ";   
-        }
-        if (standalone != null) {
-            xmlDecl += " standalone='" + standalone + "' ";
-        }
-        xmlDecl += "?>";
-        state = DECL;
-        strIndex = 0;
-        
-        if (rootName != null) {
-            rootStart = "<" + rootName + ">";
-            rootEnd = "</" + rootName + ">";
-        }
-        else {
-            rootStart = "";
-            rootEnd = "";
-        }
-    }
-    
-    /**
-     *  Constructor.  Equivalent to 
-     *                <code>XMLWrapperStream (wrappedStream, null, null, null, null)</code>
-     *  
-     *  @param wrappedStream       The stream which this stream will subsume.
-     */
-    public XMLWrapperStream (InputStream wrappedStream)
-    {
-        this (wrappedStream, null, null, null, null);
-    }
-
-    /**
-     *  Constructor.  Equivalent to 
-     *                <code>XMLWrapperStream (wrappedStream, rootName, null, null, null)</code>
-     *  
-     *  @param wrappedStream       The stream which this stream will subsume.
-     *  @param rootName            The name of the root element.  May be null.
-     */
-    public XMLWrapperStream (InputStream wrappedStream, String rootName)
-    {
-        this (wrappedStream, rootName, null, null, null);
-    }
-    
-    
-    /** 
-     * Get a byte.  Successive calls will return the
-     * XML declaration, then the wrapped stream.
-     * 
-     * @see java.io.InputStream#read()
-     */
-    public int read() throws IOException 
-    {
-        int retval;
-        if (state == DECL) { 
-            if (strIndex >= xmlDecl.length()) {
-                // We have finished the declaration string now.
-                state = ROOT_START;
-                strIndex = 0;
-            }
-            else {
-                // We haven't finished returning the declaration string.
-                return (int) xmlDecl.charAt(strIndex++);
-            }
-        }
-        
-        // Each state can fall through to the next
-        
-        if (state == ROOT_START) {
-            if (strIndex >= rootStart.length()) {
-                // We have finished the root element start now.
-                state = CONTENT;
-            }
-            else {
-            return (int) rootStart.charAt(strIndex++);
-            }
-        }
-             
-        if (state == CONTENT) {
-            // Metadata alleged stream doesn't look remotely like metadata --
-            // probably looking at wrong part of file!
-            retval = _wrappedStream.read ();
-            if (retval == -1) {
-                state = ROOT_END;
-                strIndex = 0;
-            }
-            else {
-                return retval;
-            }
-        }
-            
-        // Must be ROOT_END if it gets here
-        if (strIndex >= rootEnd.length()) {
-            // We have finished the root element end and the document now.
-            return -1;
-        }
-        else {
-            return (int) rootEnd.charAt(strIndex++);
-        }
-        
-     }
-
-}

jhove/classes/edu/harvard/hul/ois/jhove/XMPHandler.java

@@ -1,175 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-
-import org.xml.sax.*;
-
-/**
- *  This class encapsulates XMP metadata within a file.  It makes use
- *  of an InputStream as a data source.
- *
- *  This differs from normal XML handling in that it's necessary to
- *  process the xpacket processing instruction in order to determine
- *  the encoding of the XML.  the processingInstruction function looks
- *  for xpacket, and throws a special SAXException if it's necessary
- *  to change encoding.
- *
- *  We don't actually extract any information from the XMP, but
- *  simply check it for well-formedness.  By convention, XMPHandler
- *  should be invoked on an XMPSource (TBW), which provides the
- *  ability to recapture the InputStream from which the XMP was
- *  obtained and put it into a property once it's verified here.
- *  
- */
-public class XMPHandler extends org.xml.sax.helpers.DefaultHandler {
-
-    /* URI strings */
-    private final static String xmpBasicSchema = 
-        "http://ns.adobe.com/xap/1.0/";
-//    private final static String xmpRightsSchema =
-//        "http://ns.adobe.com/xap/1.0/rights/";
-//    private final static String dublinCoreSchema =
-//        "http://purl.org/dc/elements/1.1/";
-//    private final static String adobePDFSchema =
-//        "http://ns.adobe.com/pdf/1.3/";
-//    private final static String photoshopSchema =
-//        "http://ns.adobe.com/photoshop/1.0/";
-
-    private int curStructType;
-    /* Values which may be assigned to curStructType */
-    private final static int
-        UNASSIGNED = 0,
-        BAG = 1,
-        ALT = 2,
-        SEQ = 3;
-        
-    private boolean pdfaCompliant;
-        
-    public XMPHandler ()
-    {
-        super ();
-        pdfaCompliant = true;            // compliance is presumed till disproven
-    }
-
-
-    /** Returns true if no violations of PDF/A compliance have been found,
-     *  false if a problem was detected. */
-    public boolean isPdfaCompliant () {
-        return pdfaCompliant;
-    }
-    
-    
-    public void processingInstruction (String target, String data)
-                        throws SAXException
-    {
-        if ("xpacket".equals (target)) {
-            // We assume that the data will be non-endian (i.e., simply
-            // a stream of bytes) unless we find a valid endian code.
-            boolean bigEndian = false;
-            boolean noEndian = true;
-            // a Processing Instruction can't really have attributes,
-            // so we have to parse the data string ourselves.  The order
-            // of the attributes is guaranteed, fortunately.
-            int idx = data.indexOf ("begin=");
-            idx = data.indexOf ('"', idx + 1);
-            if (data.length () >= idx + 2) {
-                int char1 = (int) data.charAt (idx + 1);
-                int char2 = (int) data.charAt (idx + 2);
-                if (char1 == 0XFF && char2 == 0XFE) {
-                    noEndian = false;
-                    bigEndian = false;
-                } 
-                else if (char1 == 0XFE && char2 == 0XFF) {
-                    noEndian = false;
-                    bigEndian = true;
-                } 
-                // EF BB B8 signifies UTF-8, but that's the default anyway.
-            }
-            // Check the bytes attribute. We don't do anything with it except
-            // note that it isn't allowed with PDF/A.
-            idx = data.indexOf("bytes=");
-            if (idx > 0) {
-                pdfaCompliant = false;
-            }
-            // Next find encoding, which is optional.
-            idx = data.indexOf ("encoding=");
-            if (idx > 0) {
-                pdfaCompliant = false;          // not allowed in PDF/A
-                idx = data.indexOf ('"', idx + 1);
-                int encEnd = data.indexOf ('"', idx + 1 );
-                String encoding = data.substring (idx + 1, encEnd);
-                // Throw a SAXException which consists of 
-                // "ENC=<endian>,<enc>", where 
-                // endian is either 'B' (big), 'L' (little) or space (none), and 
-                // enc is the encoding attribute.
-                // This is an expected exception, not an error.
-                String exText = "ENC=";
-                if (noEndian) {
-                    exText += " ,";
-                }
-                else if (bigEndian) {
-                    exText += "B,";
-                }
-                else {
-                    exText += "L,";
-                }
-                exText += encoding;
-                throw new SAXException (exText);
-            }
-        }
-    }
-    
-    
-    /**
-     *  Catches the start of an element and, if it's one we care
-     *  about, sets state information.
-     */
-    public void startElement (String namespaceURI, String localName,
-                  String rawName, Attributes atts)
-    throws SAXException
-    {
-        //System.out.println (namespaceURI);   // Just for debugging and placeholding
-        if (xmpBasicSchema.equals (namespaceURI)) {
-            if ("Bag".equals (rawName)) {
-                curStructType = BAG;
-            }
-            else if ("Seq".equals (rawName)) {
-                curStructType = SEQ;
-            }
-            else if ("Alt".equals (rawName)) {
-                curStructType = ALT;
-            }
-        }
-    }
-    
-    
-    /**
-     *  Catches the end of an element.
-     */
-    public void endElement (String namespaceURI, String localName,
-                String rawName)
-    throws SAXException
-    {
-        if (xmpBasicSchema.equals (namespaceURI)) {
-            // Check for the end of an XMP structure
-            if ("Bag".equals (rawName)||
-                    "Seq".equals (rawName) ||
-                    "Alt".equals (rawName)) {
-                curStructType = UNASSIGNED;
-            }
-        }
-    }
-    
-    /** Catch a fatal error.  This is put here because the default
-     *  behavior is to report a "fatal error" to standard output,
-     *  which is harmless but scary.  
-     */
-    public void fatalError(SAXParseException exception)
-                throws SAXException
-    {
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/XMPSource.java

@@ -1,118 +0,0 @@
-/**********************************************************************
- * Jhove - JSTOR/Harvard Object Validation Environment
- * Copyright 2003 by JSTOR and the President and Fellows of Harvard College
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove;
-
-//import java.io.InputStream;
-import java.io.Reader;
-
-import org.xml.sax.InputSource;
-import java.io.IOException;
-
-/**
- * Class for providing an InputSource to XMPHandler.
- * Only an InputSource based on a Reader is supported.
- * 
- * Each module can provide its own subclass of XMPSource.
- * The subclass must provide a way to
- * reset to the beginning and reread the data when makeProperty
- * is called.
- * 
- * @author Gary McGath
- *
- */
-public abstract class XMPSource extends InputSource {
-
-    /** The Reader on which the InputSource is based. */
-    protected Reader _reader;
-    
-
-    /**
-     * Constructor with Reader.
-     */
-    public XMPSource(Reader rdr) {
-        super(rdr);
-        _reader = rdr;
-    }
-
-
-    /**
-     *  Generates a property from the underlying data.
-     *  The beginning and ending processing instructions are
-     *  stripped out.
-     */
-    public Property makeProperty () throws IOException
-    {
-        boolean maybePI = false;   // set to true for ?xpacket partial match
-        boolean seenStart = false; // set to true after initial xpacket
-        resetReader ();            // go back to the beginning
-        StringBuffer textBuf = new StringBuffer ();
-        StringBuffer xpacBuf = new StringBuffer ();
-        for (;;) {
-            int ch = _reader.read();
-            if (ch < 0) {
-                break;
-            }
-            if (maybePI) {
-                xpacBuf.append((char) ch);
-                if ("<?xpacket".equals (xpacBuf.toString ())) {
-                    if (!seenStart) {
-                        // This is the starting xpacket.  Clear away
-                        // everything to the closing ?>
-                        seenStart = true;
-                        xpacBuf.setLength (0);
-                        maybePI = false;
-                        int prevCh = 0;
-                        for (;;) {
-                            ch = _reader.read ();
-                            if (ch < 0 ||
-                                 (prevCh == (int) '?' && ch == (int) '>')) {
-                                break;
-                            }
-                            prevCh = ch;
-                        }
-                    }
-                    else {
-                        // This is the ending xpacket. Discard it.
-                        // We're done.
-                        break;
-                    }
-                }
-                if (!"<?xpacket".startsWith(xpacBuf.toString ())) {
-                    // Not an xpacket -- clear xpacBuf into the prop string
-                    maybePI = false;
-                    textBuf.append (xpacBuf);
-                    xpacBuf.setLength (0);
-                }
-            }
-            else {
-                if (ch == '<') {
-                    // This could be the start of an <?xpacket?>.
-                    // Start buffering.
-                    maybePI = true;
-                    xpacBuf.append ((char) ch);
-                }
-                else {
-                    // Just plain text.  Append it.
-                    textBuf.append ((char) ch);
-                }
-            }
-        }
-        // Some XMP's end with lots of white space, so give
-        // it a trim before returning.
-        return new Property ("XMP",
-                PropertyType.STRING,
-                textBuf.toString ().trim ());
-    }
-    
-    
-    /**
-     *  Causes reading to begin from the start again.
-     *  Typically this means creating a new value for
-     *  _reader that will start over.
-     */
-    protected abstract void resetReader ();
-
-}

jhove/classes/edu/harvard/hul/ois/jhove/build.xml

@@ -1,79 +0,0 @@
-<project name="Jhove" default="api-dist" basedir=".">
-  <description>API build file
-    Jhove - JSTOR/Harvard Object Validation Environment
-    Version 1.0 2004-02-03
-    Copyright 2004 by JSTOR and the President and Fellows of Harvard College
-  </description>
-
-  <!-- set global properties for this build -->
-  <property name="root" location="../../../../.."/>
-  <property name="bin"  location="${root}/../bin"/>
-  <property name="classpath" value="${root}"/>
-  <property name="jar"  location="${bin}/jhove.jar"/>
-  <property name="manifest" location="META-INF"/>
-
-  <target name="api-init" description="Create the time stamp">
-    <tstamp>
-      <format property="timestamp.isoformat" pattern="yyyy-MM-dd'T'HH:mm:ss"/>
-    </tstamp>
-  </target>
-
-  <target name="api" depends="api-init" description="Compile the API">
-    <javac compiler="javac1.5" target="1.5" srcdir="." debug="${dbg}" classpath="${classpath}"/>
-  </target>
-
-  <target name="api-manifest" depends="api">
-    <mkdir dir="${manifest}"/>
-    <manifest file="${manifest}/MANIFEST.MF">
-      <attribute name="Built-By" value="${user.name}"/>
-      <attribute name="Built-On" value="${timestamp.isoformat}"/>
-      <section name="JHOVE">
-        <attribute name="Version" value="1.0"/>
-        <attribute name="Package" value="Framework API"/>
-        <attribute name="Rights"  value="Copyright 2004 by JSTOR and the President and Fellows of Harvard College"/>
-      </section>
-    </manifest>
-  </target>
-
-  <target name="api-dist" depends="api-manifest,module,handler"
-          description="Create the distribution">
-    <mkdir dir="${bin}"/>
-    <jar destfile="${jar}" basedir="${root}" index="true"
-         manifest="${manifest}/MANIFEST.MF"
-         includes="edu/harvard/hul/ois/jhove/*.class"/>
-  </target>
-
-  <target name="module">
-    <ant dir="module" target="module-dist" inheritAll="false">
-      <property name="dbg" value="${dbg}"/>
-    </ant>
-  </target>
-
-  <target name="handler">
-    <ant dir="handler" target="handler-dist" inheritAll="false">
-      <property name="dbg" value="${dbg}"/>
-    </ant>
-  </target>
-
-  <target name="api-clean" description="Delete backup files">
-    <delete>
-      <fileset dir="." includes="*~ \#*"/>
-    </delete>
-    <ant dir="handler" target="handler-clean" inheritAll="false"/>
-    <ant dir="module"  target="module-clean"  inheritAll="false"/>
-    <delete>
-      <fileset dir="./viewer" includes="*~ \#*"/>
-    </delete>
-  </target>
-
-  <target name="api-cleanclass" description="Delete backup and class files">
-    <delete>
-      <fileset dir="." includes="*.class*"/>
-    </delete>
-    <ant dir="handler" target="handler-cleanclass" inheritAll="false"/>
-    <ant dir="module"  target="module-cleanclass"  inheritAll="false"/>
-    <delete>
-      <fileset dir="./viewer" includes="*.class*"/>
-    </delete>
-  </target>
-</project>

jhove/classes/edu/harvard/hul/ois/jhove/handler/AuditHandler.java

@@ -1,438 +0,0 @@
-/**********************************************************************
- * Audit output handler
- * Copyright 2004 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove.handler;
-
-import edu.harvard.hul.ois.jhove.*;
-import edu.harvard.hul.ois.jhove.handler.audit.*;
-import java.util.*;
-
-/**
- * JHOVE audit output handler, derived from the standard JHOVE XML
- * handler.  It is expected that this class will be used as the parent for
- * other, more interesting output handlers.  Subclasses should override the
- * implementations of the Impl methods, e.g., endDirectoryImpl ().
- * @see <a href="http://hul.harvard.edu/jhove/using.html#xml-hul">JHOVE
- * XML output handler</a>
- */
-public class AuditHandler
-    extends XmlHandler
-{
-    /******************************************************************
-     * PRIVATE CLASS FIELDS.
-     ******************************************************************/
-
-    /** Audit output handler name. */
-    private static final String NAME = "Audit";
-
-    /** Audit output handler release ID. */
-    private static final String RELEASE = "1.1";
-
-    /** Audit output handler release date. */
-    private static final int [] DATE = {2005, 04, 22};
-
-    /** Audit output handler informative note. */
-    private static final String NOTE =
-        "This output handler is derived from the standard JHOVE XML output " +
-        "handler.  It is intended to be used as the parent class for other, " +
-	"more interesting handlers.";
-
-    /** Audit output handler rights statement. */
-    private static final String RIGHTS =
-        "Copyright 2004-2005 by the President and Fellows of Harvard College. " +
-        "Released under the GNU LGPL license";
-
-    /*****************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /** Home directory of the audit. */
-    protected String _home;
-
-    /** Number of files processed by MIME type. */
-    protected Map _mimeType;
-
-    /** State map. */
-    protected Map _stateMap;
-
-    /** State stack. */
-    protected Stack _stateStack;
-
-    /** Initial time. */
-    protected long _t0;
-
-    /** Number of files audited. */
-    protected int _nAudit;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     *  Instantiate a <tt>AudiHandler</tt> object.
-     */
-    public AuditHandler ()
-    {
-        super (NAME, RELEASE, DATE, NOTE, RIGHTS);
-
-	/* Define the standard output handler properties. */
-
-        _name    = NAME;
-        _release = RELEASE;
-        Calendar calendar = new GregorianCalendar ();
-        calendar.set (DATE[0], DATE[1]-1, DATE[2]);
-        _date    = calendar.getTime ();
-        _note    = NOTE;
-        _rights  = RIGHTS;
-
-	/* Initialize the handler. */
-
-	_mimeType   = new TreeMap ();
-	_stateMap   = new TreeMap ();
-	_stateStack = new Stack ();
-	_nAudit     = 0;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     ******************************************************************/
-
-    /**
-     * Callback indicating a directory is finished being processed.
-     * Prop the state stack and place the current directory file count
-     * into the directory hash.
-     */
-    public final void endDirectory ()
-    {
-	AuditState state = (AuditState) _stateStack.pop ();
-	_stateMap.put (state.getDirectory (), state);
-
-	endDirectoryImpl (state);
-    }
-
-    /**
-     * Local extension to the standard callback indicating a directory is
-     * finished being processed.
-     * @param state Audit handler state
-     */
-    public void endDirectoryImpl (AuditState state)
-    {
-    }
-
-    /**
-     * Determine whether or not to process the file.
-     * @param filepath File pathname 
-     */
-    public final boolean okToProcess (String filepath)
-    {
-	AuditState state = (AuditState) _stateStack.peek ();
-
-	boolean ok = okToProcessImpl (filepath, state);
-	if (!ok) {
-	    state.setNotProcessed (state.getNotProcessed () + 1);
-	}
-
-	return ok;
-    }
-
-    /**
-     * Local extension to standard callback that determines whether or not
-     * to process the file.
-     * @param filepath File pathname 
-     * @param state Audit handler state
-     */
-    public boolean okToProcessImpl (String filepath, AuditState state)
-    {
-	return true;
-    }
-
-    /**
-     *  Outputs the information contained in a RepInfo object
-     * @param info Object representation information
-     */
-    public void show (RepInfo info)
-    {
-	AuditState state = (AuditState) _stateStack.peek ();
-
-	/* If the file is not found, then no module is assigned in the
-	 * RepInfo object.
-	 */
-	if (info.getModule () == null) {
-	    state.setNotFound (state.getNotFound () + 1);
-
-	    _writer.println ("<!-- file not found or not readable: " +
-			     info.getUri () + " -->");
-	}
-	else {
-	    String mime = info.getMimeType ();
-	    AuditCount count = (AuditCount) _mimeType.get (mime);
-	    if (count == null) {
-		count = new AuditCount ();
-	    }
-
-	    int valid = info.getValid ();
-	    if (valid == RepInfo.TRUE) {
-		state.setValid (state.getValid () + 1);
-		count.setValid (count.getValid () + 1);
-	    }
-	    else {
-		state.setWellFormed (state.getWellFormed () + 1);
-		count.setWellFormed (count.getWellFormed () + 1);
-	    }
-	    _mimeType.put (mime, count);
-	}
-
-	showImpl (info, state);
-    }
-
-    /**
-     * Local extension to the standard callback that outputs the
-     * information contained in a RepInfo object
-     * @param info Object representation information
-     * @param state Audit handler state
-     */
-    public void showImpl (RepInfo info, AuditState state)
-    {
-	String status = null;
-	String mime = info.getMimeType ();
-	if (mime != null) {
-	    if (info.getWellFormed () == RepInfo.TRUE) {
-		if (info.getValid () == RepInfo.TRUE) {
-		    status = "valid";
-		}
-		else {
-		    status = "well-formed";
-		}
-	    }
-	    else {
-		status = "not well-formed";
-	    }
-	}
-	else {
-	    status = "not found";
-	}
-
-	/* Retrieve the MD5 checksum, if available. */
-
-	String md5 = null;
-	List list = info.getChecksum ();
-	int len = list.size ();
-	for (int i=0; i<len; i++) {
-	    Checksum checksum = (Checksum) list.get (i);
-	    if (checksum.getType ().equals (ChecksumType.MD5)) {
-		md5 = checksum.getValue ();
-		break;
-	    }
-	}
-	 
-	if (_nAudit == 0) {
-	    String margin = getIndent (++_level);
-
-	    String [][] attrs = { {"home", _home} };
-	    _writer.println (margin + elementStart ("audit", attrs));
-	}
-
-	String margn2 = getIndent (_level) + " ";
-
-	String uri = info.getUri ();
-
-	/* Change the URI to a relative path by removing the home
-	 * directory prefix.
-	 */
-	int n = uri.indexOf (_home);
-	if (n == 0) {
-	    uri = uri.substring (_home.length () + 1);
-	}
-	String [][] attrs = { {"mime", mime }, {"status", status},
-			      {"md5", md5} };
-	_writer.println (margn2 + element ("file", attrs, uri));
-	_nAudit++;
-    }
-
-    /**
-     * Do the final output.  This should be in a suitable format for
-     * including multiple files between the header and the footer, and
-     * the XML of the header and footer must balance out.
-     */
-    public void showFooter ()
-    {
-	AuditState state = (AuditState) _stateStack.pop ();
-	if (state.getTotal () > 0 || state.getNotFound () > 0) {
-	    _stateMap.put (state.getDirectory (), state);
-	}
-
-	showFooterImpl (state);
-	//	super.showFooter ();
-
-	_writer.println ("<!-- Summary by MIME type:");
-	int nTotal      = 0;
-	int nValid      = 0;
-	int nWellFormed = 0;
-	Set keys = _mimeType.keySet ();
-	Iterator iter = keys.iterator ();
-	while (iter.hasNext ()) {
-	    String mime = (String) iter.next ();
-	    AuditCount count = (AuditCount) _mimeType.get (mime);
-	    int total      = count.getTotal ();
-	    int valid      = count.getValid ();
-	    int wellFormed = count.getWellFormed ();
-
-	    _writer.println (mime + ": " + total + " (" + valid + "," +
-			     wellFormed + ")");
-
-	    nTotal      += total;
-	    nValid      += valid;
-	    nWellFormed += wellFormed;
-	}
-	_writer.println ("Total: " + nTotal + " (" + nValid + "," +
-			 nWellFormed + ")");
-	_writer.println ("-->");
-
-	_writer.println ("<!-- Summary by directory:");
-	nTotal        = 0;
-	nValid        = 0;
-	nWellFormed   = 0;
-	int nNotFound = 0;
-	int nNotProcessed = 0;
-	keys = _stateMap.keySet ();
-	iter = keys.iterator ();
-	while (iter.hasNext ()) {
-	    String directory = (String) iter.next ();
-	    state = (AuditState) _stateMap.get (directory);
-
-	    int total        = state.getTotal ();
-	    int valid        = state.getValid ();
-	    int wellFormed   = state.getWellFormed ();
-	    int notFound     = state.getNotFound ();
-	    int notProcessed = state.getNotProcessed ();
-	    _writer.println (directory + ": " + total + " (" + valid + "," +
-			     wellFormed + ") + " + notProcessed + "," +
-			     notFound);
-
-	    nTotal        += total;
-	    nValid        += valid;
-	    nWellFormed   += wellFormed;
-	    nNotFound     += notFound;
-	    nNotProcessed += notProcessed;
-	}
-	_writer.println ("Total: " + nTotal + " (" + nValid + "," +
-			 nWellFormed + ") + " + nNotProcessed + "," +
-			 nNotFound);
-	_writer.println ("-->");
-
-	/* Update the elapsed time. */
-	long dt = (System.currentTimeMillis () - _t0 + 999) / 1000;
-
-	long ss = dt % 60;
-	long dm = dt / 60;
-	long mm = dm % 60;
-	long hh = dm / 60;
-
-	_writer.println ("<!-- Elapsed time: " + hh + ":" +
-			 (mm > 9 ? "" : "0") + mm + ":" +
-			 (ss > 9 ? "" : "0") + ss + " -->");
-        _writer.flush ();
-    }
-
-    /**
-     * Local extension to the standard callback that does the final output.
-     * This should be in a suitable format for
-     * including multiple files between the header and the footer, and
-     * the XML of the header and footer must balance out.
-     * @param state Audit handler state
-     */
-    public void showFooterImpl (AuditState state)
-    {
-	if (_nAudit > 0) {
-	    String margin = getIndent (_level--);
-	    _writer.println (margin + elementEnd ("audit"));
-	}
-	super.showFooter ();
-    }
-
-    /**
-     * Do the initial output.  This should be in a suitable format for
-     * including multiple files between the header and the footer, and
-     * the XML of the header and footer must balance out.
-     */
-    public void showHeader ()
-    {
-        /* Initialize the handler. */
-
-        _mimeType   = new TreeMap ();
-        _stateMap   = new TreeMap ();
-        _stateStack = new Stack ();
-        _nAudit     = 0;
-
-        _t0 = System.currentTimeMillis ();
-
-	/* Instantiate a state object and initialize with the values
-	 * of the global configuration file.
-	 */
-
-        AuditState state = showHeaderImpl (".");
-        _stateStack.push (state);
-        _home = state.getDirectory ();
-    }
-
-    /**
-     * Local extension to the standard callback that does the initial output.
-     * This should be in a suitable format for including multiple files
-     * between the header and the footer, and the XML of the header and footer
-     * must balance out.
-     * @param directory Current directory filepath
-     */
-    public AuditState showHeaderImpl (String directory)
-    {
-	super.showHeader ();
-
-	return new AuditState (directory);
-    }
-
-    /**
-     * Callback indicating a new directory is being processed.
-     *
-     * Additional state information can be added to the AuditState object
-     * in the showHeaderImpl() method before it is pushed onto the stack.
-     */
-    public void startDirectory (String directory)
-    {
-	try {
-	    AuditState state = (AuditState)
-		((AuditState) _stateStack.peek ()).clone (directory);
-
-	    startDirectoryImpl (state);
-	    _stateStack.push (state);
-	}
-	catch (CloneNotSupportedException e) {
-	    e.printStackTrace (System.err);
-	    System.exit (-1);
-	}
-    }
-
-    /**
-     * Local extension to the standard callback indicating a new directory
-     * is being processed.
-     * @param state Audit handler state
-     */
-    public void startDirectoryImpl (AuditState state)
-    {
-    }
-}

jhove/classes/edu/harvard/hul/ois/jhove/handler/META-INF/MANIFEST.MF

@@ -1,12 +0,0 @@
-Manifest-Version: 1.0
-Ant-Version: Apache Ant 1.8.3
-Created-By: 1.6.0_37-b06-434-10M3909 (Apple Inc.)
-Built-By: gmcgath
-Built-On: 2012-12-09T08:40:55
-
-Name: JHOVE
-Version: 1.0
-Package: Handlers
-Rights: Copyright 2004 by JSTOR and the President and Fellows of Harva
- rd College
-

jhove/classes/edu/harvard/hul/ois/jhove/handler/audit/AuditCount.java

@@ -1,109 +0,0 @@
-/**********************************************************************
- * Audit output handler
- * Copyright 2004 by the President and Fellows of Harvard College
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or (at
- * your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA
- **********************************************************************/
-
-package edu.harvard.hul.ois.jhove.handler.audit;
-
-//import java.io.*;
-
-/**
- * Count object for the JHOVE Audit output handler.
- */
-public class AuditCount
-{
-    /******************************************************************
-     * PRIVATE INSTANCE FIELDS.
-     ******************************************************************/
-
-    /** Number of files not processed. */
-    protected int _notProcessed;
-
-    /** Number of valid files. */
-    protected int _valid;
-
-    /** Number of well-formed files. */
-    protected int _wellFormed;
-
-    /******************************************************************
-     * CLASS CONSTRUCTOR.
-     ******************************************************************/
-
-    /**
-     * Instantiate a <tt>AuditCount</tt> object.
-     */
-    public AuditCount ()
-    {
-	_notProcessed = 0;
-	_valid        = 0;
-	_wellFormed   = 0;
-    }
-
-    /******************************************************************
-     * PUBLIC INSTANCE METHODS.
-     *
-     * Accessor methods.
-     ******************************************************************/
-
-    /** Returns the total number of files not processed. */
-    public int getNotProcessed ()
-    {
-	return _notProcessed;
-    }
-
-    /** Returns the total number of valid or well-formed
-        files. */
-    public int getTotal ()
-    {
-	return _valid + _wellFormed;
-    }
-
-    /** Returns the total number of valid files. */
-    public int getValid ()
-    {
-	return _valid;
-    }
-
-    /** Returns the total number of well-formed files. */
-    public int getWellFormed ()
-    {
-	return _wellFormed;
-    }
-
-    /******************************************************************
-     * Mutator methods.
-     ******************************************************************/
-
-    /** Sets the count of files that are not processed. */
-    public void setNotProcessed (int notProcessed)
-    {
-	_notProcessed = notProcessed;
-    }
-
-    /** Sets the count of valid files. */
-    public void setValid (int valid)
-    {
-	_valid = valid;
-    }
-
-    /** Sets the count of well-formed files. */
-    public void setWellFormed (int wellFormed)
-    {
-	_wellFormed = wellFormed;
-    }
-}